miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17058 5' -44.7 NC_004333.2 + 443 0.69 0.983655
Target:  5'- cCGggGUGu--ACGagGCCAcgGCGCGCg -3'
miRNA:   3'- -GCuuUACuuuUGCa-UGGUagCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 790 0.71 0.953921
Target:  5'- uCGAccuUGA--GCGUGCCGgUCGCcgGCGCa -3'
miRNA:   3'- -GCUuu-ACUuuUGCAUGGU-AGCG--UGCG- -5'
17058 5' -44.7 NC_004333.2 + 1103 0.66 0.998082
Target:  5'- gCGAAA-GAucGCGcucaCGUUGCGCGCa -3'
miRNA:   3'- -GCUUUaCUuuUGCaug-GUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 1563 0.68 0.990724
Target:  5'- aCGAAGccggccGAcAACGUGCCGUCG-AUGCc -3'
miRNA:   3'- -GCUUUa-----CUuUUGCAUGGUAGCgUGCG- -5'
17058 5' -44.7 NC_004333.2 + 2046 0.7 0.981376
Target:  5'- aCGgcGUGAuccucGAACuUGCCGUaGCGCGCa -3'
miRNA:   3'- -GCuuUACU-----UUUGcAUGGUAgCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 2183 0.75 0.849986
Target:  5'- aGGAAcuugccUGAcAGCuUGCCGUCGUACGCg -3'
miRNA:   3'- gCUUU------ACUuUUGcAUGGUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 2332 0.68 0.992044
Target:  5'- gCGGAAUGcGAGCaccgugcgGCCGUUGCGCaGCu -3'
miRNA:   3'- -GCUUUACuUUUGca------UGGUAGCGUG-CG- -5'
17058 5' -44.7 NC_004333.2 + 2473 0.75 0.827218
Target:  5'- uCGAGAUGcAGGCGUGCguugugguagcugAUCGCGCGCc -3'
miRNA:   3'- -GCUUUACuUUUGCAUGg------------UAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 2793 0.68 0.993209
Target:  5'- uGAAGcGGuuGCGcagGgCAUCGUACGCg -3'
miRNA:   3'- gCUUUaCUuuUGCa--UgGUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 3370 0.69 0.987574
Target:  5'- uCGAGcgGAAcaaugucgaccGGCGUcGCCGUCGU-CGCg -3'
miRNA:   3'- -GCUUuaCUU-----------UUGCA-UGGUAGCGuGCG- -5'
17058 5' -44.7 NC_004333.2 + 4220 0.67 0.996585
Target:  5'- uGAcAUGGAuACGUGCauacggUAUCGCcguGCGCa -3'
miRNA:   3'- gCUuUACUUuUGCAUG------GUAGCG---UGCG- -5'
17058 5' -44.7 NC_004333.2 + 4245 0.67 0.995911
Target:  5'- uCGgcGUGAGGAU--GCCG-CGCACGUu -3'
miRNA:   3'- -GCuuUACUUUUGcaUGGUaGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 4828 0.71 0.962464
Target:  5'- cCGGAAucUGGAuaguCGgcugACCGUaCGCGCGCg -3'
miRNA:   3'- -GCUUU--ACUUuu--GCa---UGGUA-GCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 5499 0.66 0.998438
Target:  5'- cCGgcGUGGAGACGaucggcGCUGUUGCGgGCu -3'
miRNA:   3'- -GCuuUACUUUUGCa-----UGGUAGCGUgCG- -5'
17058 5' -44.7 NC_004333.2 + 5649 0.67 0.996585
Target:  5'- -----cGAAcuCGUACCAguugccgucUCGCGCGUc -3'
miRNA:   3'- gcuuuaCUUuuGCAUGGU---------AGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 6862 0.69 0.987574
Target:  5'- ---------cACGU-CCAUCGCGCGCc -3'
miRNA:   3'- gcuuuacuuuUGCAuGGUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 8048 0.68 0.993209
Target:  5'- aCGAuccGUGGAuauagacgaAGCGUGCCAUCauGC-CGCc -3'
miRNA:   3'- -GCUu--UACUU---------UUGCAUGGUAG--CGuGCG- -5'
17058 5' -44.7 NC_004333.2 + 8892 0.69 0.985717
Target:  5'- -cGGGUGAGcagccAACcUGCgAUCGCGCGCg -3'
miRNA:   3'- gcUUUACUU-----UUGcAUGgUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 8941 0.68 0.993209
Target:  5'- uCGggGUGcgguCG-AgCAUUGCACGCa -3'
miRNA:   3'- -GCuuUACuuuuGCaUgGUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 8974 0.66 0.998962
Target:  5'- cCGAc--GGGAGCGcggGCCGUgcugccggugcagCGCGCGCa -3'
miRNA:   3'- -GCUuuaCUUUUGCa--UGGUA-------------GCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.