miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17060 3' -50.9 NC_004333.2 + 20657 1.08 0.002489
Target:  5'- cUUGCGAUCGACACGUCGAUCGCUUACa -3'
miRNA:   3'- -AACGCUAGCUGUGCAGCUAGCGAAUG- -5'
17060 3' -50.9 NC_004333.2 + 27521 0.84 0.107583
Target:  5'- -aGCGAUCGACGUGUCGAUCGCaagUGCc -3'
miRNA:   3'- aaCGCUAGCUGUGCAGCUAGCGa--AUG- -5'
17060 3' -50.9 NC_004333.2 + 30906 0.76 0.345726
Target:  5'- -cGCG-UCGAgCGCGUCGA-CGCUUGCc -3'
miRNA:   3'- aaCGCuAGCU-GUGCAGCUaGCGAAUG- -5'
17060 3' -50.9 NC_004333.2 + 9191 0.76 0.363427
Target:  5'- -cGCGA-CGGCAgUGUCGAUCGCggUGCg -3'
miRNA:   3'- aaCGCUaGCUGU-GCAGCUAGCGa-AUG- -5'
17060 3' -50.9 NC_004333.2 + 18425 0.74 0.440261
Target:  5'- -cGCGAUCGGCgGCGUCGAcacCGCgaGCg -3'
miRNA:   3'- aaCGCUAGCUG-UGCAGCUa--GCGaaUG- -5'
17060 3' -50.9 NC_004333.2 + 19423 0.73 0.492711
Target:  5'- -cGCGGUCGACGCGgCGcUCGCgcagUUGCu -3'
miRNA:   3'- aaCGCUAGCUGUGCaGCuAGCG----AAUG- -5'
17060 3' -50.9 NC_004333.2 + 33020 0.73 0.525525
Target:  5'- -cGgGAUCG--GCGUCGAUCGCUUugaGCg -3'
miRNA:   3'- aaCgCUAGCugUGCAGCUAGCGAA---UG- -5'
17060 3' -50.9 NC_004333.2 + 35517 0.72 0.547853
Target:  5'- -cGCGGUCGACcCGUCGAUCa----- -3'
miRNA:   3'- aaCGCUAGCUGuGCAGCUAGcgaaug -5'
17060 3' -50.9 NC_004333.2 + 39183 0.72 0.55913
Target:  5'- -cGCGAaCGcCGCGUCGGUCGCc--- -3'
miRNA:   3'- aaCGCUaGCuGUGCAGCUAGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 779 0.72 0.570471
Target:  5'- cUGCGAUUGcuuGCGCGUCGGUCGg---- -3'
miRNA:   3'- aACGCUAGC---UGUGCAGCUAGCgaaug -5'
17060 3' -50.9 NC_004333.2 + 29752 0.71 0.604788
Target:  5'- -cGCGGugUCGACGcCGcCGAUCGCgagGCg -3'
miRNA:   3'- aaCGCU--AGCUGU-GCaGCUAGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 19489 0.71 0.604788
Target:  5'- aUGCGAUCGGCGC-UgGcgCGCUgGCg -3'
miRNA:   3'- aACGCUAGCUGUGcAgCuaGCGAaUG- -5'
17060 3' -50.9 NC_004333.2 + 22871 0.71 0.616291
Target:  5'- -gGCGAUCGGCGCGaUCGuacuggCGCUcgugACg -3'
miRNA:   3'- aaCGCUAGCUGUGC-AGCua----GCGAa---UG- -5'
17060 3' -50.9 NC_004333.2 + 2448 0.71 0.616291
Target:  5'- -cGCGAUCGGCACGUUcg-CGCcggGCu -3'
miRNA:   3'- aaCGCUAGCUGUGCAGcuaGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 9047 0.71 0.639333
Target:  5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3'
miRNA:   3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5'
17060 3' -50.9 NC_004333.2 + 15791 0.71 0.639333
Target:  5'- -cGUGAUCGAUcucgaaGCGuUCGAUCGCgccgACg -3'
miRNA:   3'- aaCGCUAGCUG------UGC-AGCUAGCGaa--UG- -5'
17060 3' -50.9 NC_004333.2 + 44914 0.71 0.639333
Target:  5'- cUGCGucUCGAUGCGUCGcgCGCg--- -3'
miRNA:   3'- aACGCu-AGCUGUGCAGCuaGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 38988 0.7 0.673813
Target:  5'- -cGCGAUCGACACuGcCG-UCGCgaACg -3'
miRNA:   3'- aaCGCUAGCUGUG-CaGCuAGCGaaUG- -5'
17060 3' -50.9 NC_004333.2 + 20557 0.7 0.696603
Target:  5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3'
miRNA:   3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 43322 0.69 0.730243
Target:  5'- -aGCGGcaUCGGCACGgCGcgCGCgUACg -3'
miRNA:   3'- aaCGCU--AGCUGUGCaGCuaGCGaAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.