miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17060 3' -50.9 NC_004333.2 + 779 0.72 0.570471
Target:  5'- cUGCGAUUGcuuGCGCGUCGGUCGg---- -3'
miRNA:   3'- aACGCUAGC---UGUGCAGCUAGCgaaug -5'
17060 3' -50.9 NC_004333.2 + 2448 0.71 0.616291
Target:  5'- -cGCGAUCGGCACGUUcg-CGCcggGCu -3'
miRNA:   3'- aaCGCUAGCUGUGCAGcuaGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 3600 0.66 0.892645
Target:  5'- -gGCGAUCGuauuCGCccaGUCGggCGCcUGCg -3'
miRNA:   3'- aaCGCUAGCu---GUG---CAGCuaGCGaAUG- -5'
17060 3' -50.9 NC_004333.2 + 4269 0.66 0.884996
Target:  5'- gUGCGcuaCGugGCGuUUGGUCGCgcagUGCg -3'
miRNA:   3'- aACGCua-GCugUGC-AGCUAGCGa---AUG- -5'
17060 3' -50.9 NC_004333.2 + 4634 0.66 0.876256
Target:  5'- aUGCGAUCaGGCGCGgucaucgUCGAgauacgccagaaUCGCUUugGCg -3'
miRNA:   3'- aACGCUAG-CUGUGC-------AGCU------------AGCGAA--UG- -5'
17060 3' -50.9 NC_004333.2 + 5964 0.67 0.833409
Target:  5'- gUGCGGUCGAa--GUCGAgcCGCagGCa -3'
miRNA:   3'- aACGCUAGCUgugCAGCUa-GCGaaUG- -5'
17060 3' -50.9 NC_004333.2 + 6814 0.66 0.892645
Target:  5'- cUUGCGGUCgGGCGCGugcUCGAgCGCcacacgUACa -3'
miRNA:   3'- -AACGCUAG-CUGUGC---AGCUaGCGa-----AUG- -5'
17060 3' -50.9 NC_004333.2 + 7485 0.66 0.892645
Target:  5'- -gGCGAUCGGguUGguguucuuugCGGUCGCgagUGCg -3'
miRNA:   3'- aaCGCUAGCUguGCa---------GCUAGCGa--AUG- -5'
17060 3' -50.9 NC_004333.2 + 8160 0.66 0.868855
Target:  5'- -gGCGAcaggUCGGcCGCGUCcAUCGCgUACu -3'
miRNA:   3'- aaCGCU----AGCU-GUGCAGcUAGCGaAUG- -5'
17060 3' -50.9 NC_004333.2 + 9047 0.71 0.639333
Target:  5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3'
miRNA:   3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5'
17060 3' -50.9 NC_004333.2 + 9191 0.76 0.363427
Target:  5'- -cGCGA-CGGCAgUGUCGAUCGCggUGCg -3'
miRNA:   3'- aaCGCUaGCUGU-GCAGCUAGCGa-AUG- -5'
17060 3' -50.9 NC_004333.2 + 9873 0.68 0.783981
Target:  5'- -cGcCGGUCGcCGCGUgcaCGGUCGCgcgUGCa -3'
miRNA:   3'- aaC-GCUAGCuGUGCA---GCUAGCGa--AUG- -5'
17060 3' -50.9 NC_004333.2 + 11955 0.69 0.748898
Target:  5'- -gGCGGUCGagcgccuugcacGCGCGUCGAcgaucgcggccguaUCGCggUGCa -3'
miRNA:   3'- aaCGCUAGC------------UGUGCAGCU--------------AGCGa-AUG- -5'
17060 3' -50.9 NC_004333.2 + 12656 0.66 0.868855
Target:  5'- aUUGCcauuuGAUCGACGgGUCGAcCGCg--- -3'
miRNA:   3'- -AACG-----CUAGCUGUgCAGCUaGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 14097 0.67 0.833409
Target:  5'- -cGCGAUCGuCAugcCGUCGA-CGCUa-- -3'
miRNA:   3'- aaCGCUAGCuGU---GCAGCUaGCGAaug -5'
17060 3' -50.9 NC_004333.2 + 15138 0.66 0.877064
Target:  5'- --aUGAUCGACuugGCGUCGGUUGagUUGCg -3'
miRNA:   3'- aacGCUAGCUG---UGCAGCUAGCg-AAUG- -5'
17060 3' -50.9 NC_004333.2 + 15284 0.66 0.872171
Target:  5'- cUGCGG-CGGCGCGgucagcaucagcacCGggCGCUUGCc -3'
miRNA:   3'- aACGCUaGCUGUGCa-------------GCuaGCGAAUG- -5'
17060 3' -50.9 NC_004333.2 + 15791 0.71 0.639333
Target:  5'- -cGUGAUCGAUcucgaaGCGuUCGAUCGCgccgACg -3'
miRNA:   3'- aaCGCUAGCUG------UGC-AGCUAGCGaa--UG- -5'
17060 3' -50.9 NC_004333.2 + 16012 0.66 0.900004
Target:  5'- cUGCGAcgagCGAgGCuUUGAUCGgUUGCa -3'
miRNA:   3'- aACGCUa---GCUgUGcAGCUAGCgAAUG- -5'
17060 3' -50.9 NC_004333.2 + 16110 0.69 0.741258
Target:  5'- aUGCGAUCGuCGCGUCGGacacguucuuUcCGCUgACc -3'
miRNA:   3'- aACGCUAGCuGUGCAGCU----------A-GCGAaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.