miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17060 3' -50.9 NC_004333.2 + 27521 0.84 0.107583
Target:  5'- -aGCGAUCGACGUGUCGAUCGCaagUGCc -3'
miRNA:   3'- aaCGCUAGCUGUGCAGCUAGCGa--AUG- -5'
17060 3' -50.9 NC_004333.2 + 14097 0.67 0.833409
Target:  5'- -cGCGAUCGuCAugcCGUCGA-CGCUa-- -3'
miRNA:   3'- aaCGCUAGCuGU---GCAGCUaGCGAaug -5'
17060 3' -50.9 NC_004333.2 + 8160 0.66 0.868855
Target:  5'- -gGCGAcaggUCGGcCGCGUCcAUCGCgUACu -3'
miRNA:   3'- aaCGCU----AGCU-GUGCAGcUAGCGaAUG- -5'
17060 3' -50.9 NC_004333.2 + 23817 0.66 0.900004
Target:  5'- gUGCGGUC---AUGUCGAUCGCcucACg -3'
miRNA:   3'- aACGCUAGcugUGCAGCUAGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 33020 0.73 0.525525
Target:  5'- -cGgGAUCG--GCGUCGAUCGCUUugaGCg -3'
miRNA:   3'- aaCgCUAGCugUGCAGCUAGCGAA---UG- -5'
17060 3' -50.9 NC_004333.2 + 19489 0.71 0.604788
Target:  5'- aUGCGAUCGGCGC-UgGcgCGCUgGCg -3'
miRNA:   3'- aACGCUAGCUGUGcAgCuaGCGAaUG- -5'
17060 3' -50.9 NC_004333.2 + 9047 0.71 0.639333
Target:  5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3'
miRNA:   3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5'
17060 3' -50.9 NC_004333.2 + 15791 0.71 0.639333
Target:  5'- -cGUGAUCGAUcucgaaGCGuUCGAUCGCgccgACg -3'
miRNA:   3'- aaCGCUAGCUG------UGC-AGCUAGCGaa--UG- -5'
17060 3' -50.9 NC_004333.2 + 30229 0.69 0.741258
Target:  5'- --uCGAUCGACGCGcCGcgCGCgaucagUGCg -3'
miRNA:   3'- aacGCUAGCUGUGCaGCuaGCGa-----AUG- -5'
17060 3' -50.9 NC_004333.2 + 40940 0.67 0.823942
Target:  5'- -cGCGA-CGcCACaGUCGGUCGCacgGCa -3'
miRNA:   3'- aaCGCUaGCuGUG-CAGCUAGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 24587 0.69 0.752153
Target:  5'- -cGUGAUCGACuCGcCGGUCGgaUUUGCg -3'
miRNA:   3'- aaCGCUAGCUGuGCaGCUAGC--GAAUG- -5'
17060 3' -50.9 NC_004333.2 + 20557 0.7 0.696603
Target:  5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3'
miRNA:   3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 30906 0.76 0.345726
Target:  5'- -cGCG-UCGAgCGCGUCGA-CGCUUGCc -3'
miRNA:   3'- aaCGCuAGCU-GUGCAGCUaGCGAAUG- -5'
17060 3' -50.9 NC_004333.2 + 20232 0.67 0.814254
Target:  5'- -gGCGAUCGAcCGCGacuggccuaCGAUCGCgccGCa -3'
miRNA:   3'- aaCGCUAGCU-GUGCa--------GCUAGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 9191 0.76 0.363427
Target:  5'- -cGCGA-CGGCAgUGUCGAUCGCggUGCg -3'
miRNA:   3'- aaCGCUaGCUGU-GCAGCUAGCGa-AUG- -5'
17060 3' -50.9 NC_004333.2 + 44914 0.71 0.639333
Target:  5'- cUGCGucUCGAUGCGUCGcgCGCg--- -3'
miRNA:   3'- aACGCu-AGCUGUGCAGCuaGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 28965 0.67 0.814254
Target:  5'- -cGCGGUCGaACGCGgCGAUCagUUGCg -3'
miRNA:   3'- aaCGCUAGC-UGUGCaGCUAGcgAAUG- -5'
17060 3' -50.9 NC_004333.2 + 31468 0.67 0.842644
Target:  5'- -cGCGaAUCuGCuuGUCGAUCGCUUu- -3'
miRNA:   3'- aaCGC-UAGcUGugCAGCUAGCGAAug -5'
17060 3' -50.9 NC_004333.2 + 18425 0.74 0.440261
Target:  5'- -cGCGAUCGGCgGCGUCGAcacCGCgaGCg -3'
miRNA:   3'- aaCGCUAGCUG-UGCAGCUa--GCGaaUG- -5'
17060 3' -50.9 NC_004333.2 + 22871 0.71 0.616291
Target:  5'- -gGCGAUCGGCGCGaUCGuacuggCGCUcgugACg -3'
miRNA:   3'- aaCGCUAGCUGUGC-AGCua----GCGAa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.