Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17080 | 3' | -57.5 | NC_004333.2 | + | 29888 | 0.68 | 0.495459 |
Target: 5'- gGCGcgGCGAUcagcaucaacgGCCCGGUGACcg-UCGu -3' miRNA: 3'- -CGCuaCGCUG-----------CGGGCCGCUGaugAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 23658 | 0.67 | 0.547249 |
Target: 5'- uUGGUGgaUGAUGCUCGGCGGCgGCUUc -3' miRNA: 3'- cGCUAC--GCUGCGGGCCGCUGaUGAGc -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 46994 | 0.67 | 0.536736 |
Target: 5'- cGCGAggcuucGCGGCGCUcgCGGCG-CUGCa-- -3' miRNA: 3'- -CGCUa-----CGCUGCGG--GCCGCuGAUGagc -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 38234 | 0.67 | 0.535689 |
Target: 5'- uGCGA-GCGGCGUgccaagaUCGGCGGCcgGgUCGg -3' miRNA: 3'- -CGCUaCGCUGCG-------GGCCGCUGa-UgAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 20006 | 0.67 | 0.526295 |
Target: 5'- gGCGGcuCGcCGCCCGGCG-C-GCUCGu -3' miRNA: 3'- -CGCUacGCuGCGGGCCGCuGaUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 25734 | 0.67 | 0.515931 |
Target: 5'- cGCGuucGCGACGgCCGGCaaGACgcuUUCGa -3' miRNA: 3'- -CGCua-CGCUGCgGGCCG--CUGau-GAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 3455 | 0.67 | 0.505651 |
Target: 5'- cGCGAcgacgGCGACG-CCGGuCGACauuguuccGCUCGa -3' miRNA: 3'- -CGCUa----CGCUGCgGGCC-GCUGa-------UGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 30376 | 0.68 | 0.495459 |
Target: 5'- gGUGGUGUcgcaGGCGCgaCGGCGGCcaGCUCGc -3' miRNA: 3'- -CGCUACG----CUGCGg-GCCGCUGa-UGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 28722 | 0.68 | 0.495459 |
Target: 5'- uGCGAccGCGA--UCCGGCGACUugggcGCUCa -3' miRNA: 3'- -CGCUa-CGCUgcGGGCCGCUGA-----UGAGc -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 6397 | 0.67 | 0.547249 |
Target: 5'- cGCGGUGCGGuCGUCCucaCGGCUGCg-- -3' miRNA: 3'- -CGCUACGCU-GCGGGcc-GCUGAUGagc -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 11735 | 0.66 | 0.557825 |
Target: 5'- aCGAaaUGaaGCGCCUGcGCGACUACUgGc -3' miRNA: 3'- cGCU--ACgcUGCGGGC-CGCUGAUGAgC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 23619 | 0.66 | 0.568459 |
Target: 5'- uGCGuucGCGACaGCUacgcagauCGGCGGCUACcCGa -3' miRNA: 3'- -CGCua-CGCUG-CGG--------GCCGCUGAUGaGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 9534 | 0.66 | 0.60063 |
Target: 5'- gGCGGUGCGgcacccGCGCCUGGUGcGCaggACggCGa -3' miRNA: 3'- -CGCUACGC------UGCGGGCCGC-UGa--UGa-GC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 14575 | 0.66 | 0.60063 |
Target: 5'- uGCGAUGCGACGUUCaaGGaCGGCcagGCgucCGa -3' miRNA: 3'- -CGCUACGCUGCGGG--CC-GCUGa--UGa--GC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 30816 | 0.66 | 0.59417 |
Target: 5'- aGCGAUucggugaguaccucgGCGACGCCaCGGcCGA--GCUUGc -3' miRNA: 3'- -CGCUA---------------CGCUGCGG-GCC-GCUgaUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 3647 | 0.66 | 0.589869 |
Target: 5'- cGCGAUGUGGCGCacuauguggUCGGCcgacgcGCUGCgCGg -3' miRNA: 3'- -CGCUACGCUGCG---------GGCCGc-----UGAUGaGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 47486 | 0.66 | 0.589869 |
Target: 5'- gGCGAgcgGCGAUGUagCuGCGAUUGCUUGc -3' miRNA: 3'- -CGCUa--CGCUGCGg-GcCGCUGAUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 24577 | 0.66 | 0.579143 |
Target: 5'- cGCGGUGUGAUGCUgaaaUGacCGACUAuCUCGg -3' miRNA: 3'- -CGCUACGCUGCGG----GCc-GCUGAU-GAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 41298 | 0.66 | 0.579143 |
Target: 5'- aGCGAcgGCGACacgaCCGGCGACagguagccCUCGc -3' miRNA: 3'- -CGCUa-CGCUGcg--GGCCGCUGau------GAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 36322 | 0.66 | 0.579143 |
Target: 5'- uGC-AUGuCGugGCUCGGCGAgguCUACUa- -3' miRNA: 3'- -CGcUAC-GCugCGGGCCGCU---GAUGAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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