miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 26874 0.66 0.792912
Target:  5'- -cCGGGC---CGUCGGCAacgAAgCGCGCc -3'
miRNA:   3'- uaGCCCGcauGUAGCUGU---UUgGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 22902 0.66 0.761287
Target:  5'- -cCGGGCGUaucgcucACGUUcACGAGCgacaGCGCg -3'
miRNA:   3'- uaGCCCGCA-------UGUAGcUGUUUGg---CGCG- -5'
17089 5' -53.6 NC_004333.2 + 19718 0.66 0.751842
Target:  5'- -cCGuGGCGaGCuGUUGACGgccagcgucGGCCGCGCu -3'
miRNA:   3'- uaGC-CCGCaUG-UAGCUGU---------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26585 0.66 0.751842
Target:  5'- uGUCGGcGCGccggacuuCAUCGACGGAaauggCGUGCg -3'
miRNA:   3'- -UAGCC-CGCau------GUAGCUGUUUg----GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 45346 0.66 0.751842
Target:  5'- uUCGGGaCGU-CGUUcGCGAGCCaagGCGCc -3'
miRNA:   3'- uAGCCC-GCAuGUAGcUGUUUGG---CGCG- -5'
17089 5' -53.6 NC_004333.2 + 31852 0.66 0.741227
Target:  5'- gAUCGGGCGcAUGUCGcACGAcaCGCGa -3'
miRNA:   3'- -UAGCCCGCaUGUAGC-UGUUugGCGCg -5'
17089 5' -53.6 NC_004333.2 + 21987 0.66 0.740159
Target:  5'- -gCGGGcCGUuuucuuuGCGUCGGCGcgAAUCaGCGCg -3'
miRNA:   3'- uaGCCC-GCA-------UGUAGCUGU--UUGG-CGCG- -5'
17089 5' -53.6 NC_004333.2 + 41400 0.66 0.741227
Target:  5'- uUCGcGGUGaACAUCGA---GCaCGCGCa -3'
miRNA:   3'- uAGC-CCGCaUGUAGCUguuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 20178 0.66 0.741227
Target:  5'- cUCGGGCGcACAcaagaaggCGGCAGuaaugggcgcgGCuCGCGCu -3'
miRNA:   3'- uAGCCCGCaUGUa-------GCUGUU-----------UG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 27242 0.66 0.772679
Target:  5'- cUCGGGgGcacGCAU-GGCuGAUCGCGCg -3'
miRNA:   3'- uAGCCCgCa--UGUAgCUGuUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 2708 0.66 0.772679
Target:  5'- -aCGccGGCaaGCG-CGAUGAACCGCGCg -3'
miRNA:   3'- uaGC--CCGcaUGUaGCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 2369 0.66 0.781864
Target:  5'- -gCGGGCGUGCcggccacgGUacacgacuugcgaCGGCAAacgcGCUGCGCu -3'
miRNA:   3'- uaGCCCGCAUG--------UA-------------GCUGUU----UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 7139 0.66 0.792912
Target:  5'- -gCGaGaCGUcaacaucauCAUCGACGAGCUGCGCg -3'
miRNA:   3'- uaGCcC-GCAu--------GUAGCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 37728 0.66 0.782877
Target:  5'- gGUCGGGCGcGCGcUCGAUGAAugucugauCCG-GCg -3'
miRNA:   3'- -UAGCCCGCaUGU-AGCUGUUU--------GGCgCG- -5'
17089 5' -53.6 NC_004333.2 + 2112 0.66 0.782877
Target:  5'- uAUCGcGCGgGCGUCGACGugaucgaugcGGCCGUGa -3'
miRNA:   3'- -UAGCcCGCaUGUAGCUGU----------UUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 25076 0.66 0.782877
Target:  5'- -cCGuGGCGaucaGCGU-GACAGGCgGCGCg -3'
miRNA:   3'- uaGC-CCGCa---UGUAgCUGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41429 0.66 0.782877
Target:  5'- gGUCGGGCGcgUGC-UCGAgcgccacacguaCAcACuCGCGCg -3'
miRNA:   3'- -UAGCCCGC--AUGuAGCU------------GUuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 31383 0.66 0.782877
Target:  5'- -gCGGGCGccgUGC-UCGGCGu-CgGCGCa -3'
miRNA:   3'- uaGCCCGC---AUGuAGCUGUuuGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41932 0.66 0.782877
Target:  5'- uUCGGGCGaaUugAUCGGgAAACgGaUGCc -3'
miRNA:   3'- uAGCCCGC--AugUAGCUgUUUGgC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 46460 0.66 0.782877
Target:  5'- cUCGGGUGcccuuUGCucacCGACuguccuAGGCCGCGCc -3'
miRNA:   3'- uAGCCCGC-----AUGua--GCUG------UUUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.