miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 40369 1.11 0.000948
Target:  5'- gAUCGGGCGUACAUCGACAAACCGCGCa -3'
miRNA:   3'- -UAGCCCGCAUGUAGCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 38319 0.83 0.09068
Target:  5'- --aGGGCGUGCAUCacguuGACGAACgGCGCg -3'
miRNA:   3'- uagCCCGCAUGUAG-----CUGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 43530 0.79 0.156113
Target:  5'- uUCuGGCGUAUcUCGACGauGACCGCGCc -3'
miRNA:   3'- uAGcCCGCAUGuAGCUGU--UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 17061 0.76 0.244193
Target:  5'- cUCGcGGUGUuccagccgcgccggaACAUCGGCGAACCGgGCc -3'
miRNA:   3'- uAGC-CCGCA---------------UGUAGCUGUUUGGCgCG- -5'
17089 5' -53.6 NC_004333.2 + 25767 0.75 0.297451
Target:  5'- -gCGGGaCGUugGUCGugGucAugCGCGCg -3'
miRNA:   3'- uaGCCC-GCAugUAGCugU--UugGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 13848 0.74 0.332202
Target:  5'- -aCGGGCGccGCGUCGAgcgcauugagcgcgcCGcGCCGCGCg -3'
miRNA:   3'- uaGCCCGCa-UGUAGCU---------------GUuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 13180 0.74 0.337166
Target:  5'- cUCGcgauGcCGUACAUCGACAAcugGCUGCGCa -3'
miRNA:   3'- uAGCc---C-GCAUGUAGCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25554 0.73 0.371623
Target:  5'- -gCGGGuCG-ACAUUGGCGAucaGCUGCGCa -3'
miRNA:   3'- uaGCCC-GCaUGUAGCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 10569 0.73 0.380604
Target:  5'- uAUCGGGC--GCAUCG-CAGGCgGUGCu -3'
miRNA:   3'- -UAGCCCGcaUGUAGCuGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 907 0.73 0.384237
Target:  5'- --gGGGUGUugGUCGGCAuugcgcccucguagcGugcGCCGCGCu -3'
miRNA:   3'- uagCCCGCAugUAGCUGU---------------U---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 45207 0.73 0.389729
Target:  5'- uUCGGGCGacgACAgguaGGCGcgaucGCCGCGCa -3'
miRNA:   3'- uAGCCCGCa--UGUag--CUGUu----UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11428 0.73 0.389729
Target:  5'- cGUCGaGCGcgGCAaggugaCGACGAACCGCGCc -3'
miRNA:   3'- -UAGCcCGCa-UGUa-----GCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 15081 0.72 0.398996
Target:  5'- uUCGcGGCGUcgGCGUCGGCGGcCCGCu- -3'
miRNA:   3'- uAGC-CCGCA--UGUAGCUGUUuGGCGcg -5'
17089 5' -53.6 NC_004333.2 + 45768 0.72 0.408403
Target:  5'- -gCaGGCGUGCGUUGugGuagcuGAUCGCGCg -3'
miRNA:   3'- uaGcCCGCAUGUAGCugU-----UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 45301 0.72 0.417947
Target:  5'- cUCGaGGCGUucgagaaggGCAUCGACGGuuacaagcucGCCGCGa -3'
miRNA:   3'- uAGC-CCGCA---------UGUAGCUGUU----------UGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 47966 0.72 0.427626
Target:  5'- gGUCGucGGCGU-CAUCGGCGGugUGCGg -3'
miRNA:   3'- -UAGC--CCGCAuGUAGCUGUUugGCGCg -5'
17089 5' -53.6 NC_004333.2 + 29883 0.72 0.437436
Target:  5'- cGUCGGcgaaGCGcUGCG-CGAuCGGGCCGCGCg -3'
miRNA:   3'- -UAGCC----CGC-AUGUaGCU-GUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 5595 0.72 0.447374
Target:  5'- cAUCGGGCaUGCGcaCGuuCAGGCCGUGCg -3'
miRNA:   3'- -UAGCCCGcAUGUa-GCu-GUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 12986 0.72 0.447374
Target:  5'- cUC-GGCGcGCAUCGACAAAUCGaCGUu -3'
miRNA:   3'- uAGcCCGCaUGUAGCUGUUUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 27190 0.72 0.447374
Target:  5'- -cCGaGGUGUGg--CGGCAGACCGUGCu -3'
miRNA:   3'- uaGC-CCGCAUguaGCUGUUUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.