miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 766 0.69 0.574857
Target:  5'- -gCGGGCGg----CGGCAcGAUCGCGCu -3'
miRNA:   3'- uaGCCCGCauguaGCUGU-UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 907 0.73 0.384237
Target:  5'- --gGGGUGUugGUCGGCAuugcgcccucguagcGugcGCCGCGCu -3'
miRNA:   3'- uagCCCGCAugUAGCUGU---------------U---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 1627 0.67 0.734802
Target:  5'- gGUCGaauGCGU-CGUCGGCGGcguagcccugaaugcGCUGCGCg -3'
miRNA:   3'- -UAGCc--CGCAuGUAGCUGUU---------------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 2112 0.66 0.782877
Target:  5'- uAUCGcGCGgGCGUCGACGugaucgaugcGGCCGUGa -3'
miRNA:   3'- -UAGCcCGCaUGUAGCUGU----------UUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 2302 0.69 0.597135
Target:  5'- cAUCGGuGCGUACGcgaacgCGGCGAACaacuacacgauCGCGUa -3'
miRNA:   3'- -UAGCC-CGCAUGUa-----GCUGUUUG-----------GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 2369 0.66 0.781864
Target:  5'- -gCGGGCGUGCcggccacgGUacacgacuugcgaCGGCAAacgcGCUGCGCu -3'
miRNA:   3'- uaGCCCGCAUG--------UA-------------GCUGUU----UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 2708 0.66 0.772679
Target:  5'- -aCGccGGCaaGCG-CGAUGAACCGCGCg -3'
miRNA:   3'- uaGC--CCGcaUGUaGCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 3005 0.68 0.641984
Target:  5'- -cCGGcGCGUccGCcgCGACGuAgCGCGCg -3'
miRNA:   3'- uaGCC-CGCA--UGuaGCUGUuUgGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 3291 0.67 0.708744
Target:  5'- ---cGGCGU-CAUCGggGCGGGCgGCGCg -3'
miRNA:   3'- uagcCCGCAuGUAGC--UGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 4029 0.7 0.509452
Target:  5'- aGUCGGGCcacCAcUCGAgAAACUGCGUg -3'
miRNA:   3'- -UAGCCCGcauGU-AGCUgUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 4222 0.66 0.792912
Target:  5'- -cUGcGCGUugacgcucgagaACAUCGGCGugaggauGCCGCGCa -3'
miRNA:   3'- uaGCcCGCA------------UGUAGCUGUu------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 4939 0.71 0.467619
Target:  5'- gGUCaGcGGCGgcagcgGCAUCGGCAcGgCGCGCg -3'
miRNA:   3'- -UAG-C-CCGCa-----UGUAGCUGUuUgGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 5194 0.66 0.751842
Target:  5'- cAUCGccugcaGGCGcgGCGUCGGC--ACCGuCGCa -3'
miRNA:   3'- -UAGC------CCGCa-UGUAGCUGuuUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 5208 0.69 0.608325
Target:  5'- -aCGGGCGgcucgcccgugACGgaCGACAAuguGCUGCGCg -3'
miRNA:   3'- uaGCCCGCa----------UGUa-GCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 5595 0.72 0.447374
Target:  5'- cAUCGGGCaUGCGcaCGuuCAGGCCGUGCg -3'
miRNA:   3'- -UAGCCCGcAUGUa-GCu-GUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 6704 0.66 0.76233
Target:  5'- --gGGGCGcAUuggCGACGAGCCauGCGUg -3'
miRNA:   3'- uagCCCGCaUGua-GCUGUUUGG--CGCG- -5'
17089 5' -53.6 NC_004333.2 + 7139 0.66 0.792912
Target:  5'- -gCGaGaCGUcaacaucauCAUCGACGAGCUGCGCg -3'
miRNA:   3'- uaGCcC-GCAu--------GUAGCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 7315 0.67 0.686678
Target:  5'- cGUCaGGCGuUGCcgCGAgAAACCGCc- -3'
miRNA:   3'- -UAGcCCGC-AUGuaGCUgUUUGGCGcg -5'
17089 5' -53.6 NC_004333.2 + 7509 0.7 0.552774
Target:  5'- cGUCGGGCcgucucGUGCAgcucUgGGC--GCCGCGCg -3'
miRNA:   3'- -UAGCCCG------CAUGU----AgCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 7713 0.66 0.792912
Target:  5'- gAUCGGcGCGgACAgCGACGGAUCGUu- -3'
miRNA:   3'- -UAGCC-CGCaUGUaGCUGUUUGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.