miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17100 3' -53.6 NC_004333.2 + 33388 0.66 0.744834
Target:  5'- -cUGAUCCguggcGCGCCGGUuggcucgauGC-GGCCGa -3'
miRNA:   3'- caAUUAGGaa---UGCGGUCG---------CGuCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 9454 0.66 0.744834
Target:  5'- ---cGUCC-UGCGCaccaGGCGCGGGUg- -3'
miRNA:   3'- caauUAGGaAUGCGg---UCGCGUCCGgc -5'
17100 3' -53.6 NC_004333.2 + 8871 0.66 0.734016
Target:  5'- --aGGUCUacaucACGCCGGCGCAaGGCa- -3'
miRNA:   3'- caaUUAGGaa---UGCGGUCGCGU-CCGgc -5'
17100 3' -53.6 NC_004333.2 + 3600 0.66 0.734016
Target:  5'- cGUUGAUCCcgcuUUACGCCgaucAGCcGCAGcaGCUGa -3'
miRNA:   3'- -CAAUUAGG----AAUGCGG----UCG-CGUC--CGGC- -5'
17100 3' -53.6 NC_004333.2 + 22067 0.66 0.727473
Target:  5'- -cUGAUUCgcgccgACGCaaagaaaacggcccgCAGUGCGGGCCGu -3'
miRNA:   3'- caAUUAGGaa----UGCG---------------GUCGCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 22437 0.66 0.712068
Target:  5'- ---cAUCCUcgGCGCgugCGGCGCAGGUUu -3'
miRNA:   3'- caauUAGGAa-UGCG---GUCGCGUCCGGc -5'
17100 3' -53.6 NC_004333.2 + 43716 0.67 0.700963
Target:  5'- --cGAUCCU---GgUGGUGCAGGCCGg -3'
miRNA:   3'- caaUUAGGAaugCgGUCGCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 1995 0.67 0.689785
Target:  5'- -gUAG-CgUUACGCCGGCGCGGaugauGCCc -3'
miRNA:   3'- caAUUaGgAAUGCGGUCGCGUC-----CGGc -5'
17100 3' -53.6 NC_004333.2 + 3914 0.67 0.689785
Target:  5'- --aGcgCCagGCGgCAGCggcgGCAGGCCGa -3'
miRNA:   3'- caaUuaGGaaUGCgGUCG----CGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 20978 0.67 0.689785
Target:  5'- --cAAUCCUgcGCGCCAaguagcacGCGCuGcGCCGg -3'
miRNA:   3'- caaUUAGGAa-UGCGGU--------CGCGuC-CGGC- -5'
17100 3' -53.6 NC_004333.2 + 9590 0.67 0.688664
Target:  5'- -----aCCUUcaGCGCCAGCcggcgcgGCAucGGCCGg -3'
miRNA:   3'- caauuaGGAA--UGCGGUCG-------CGU--CCGGC- -5'
17100 3' -53.6 NC_004333.2 + 11234 0.67 0.68305
Target:  5'- ----cUCCUUGCcggcgcucgagugcuGCCAGacggcccaaUGCAGGCCGa -3'
miRNA:   3'- caauuAGGAAUG---------------CGGUC---------GCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 31380 0.67 0.667267
Target:  5'- --gGcgCCgugcucgGCGUCGGCGCAggugcGGCCGg -3'
miRNA:   3'- caaUuaGGaa-----UGCGGUCGCGU-----CCGGC- -5'
17100 3' -53.6 NC_004333.2 + 13542 0.67 0.655948
Target:  5'- -----gCgUUGcCGCCGGCGgcCAGGCCGg -3'
miRNA:   3'- caauuaGgAAU-GCGGUCGC--GUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 5055 0.67 0.655948
Target:  5'- uGUUGG-CCg-ACGUCGGCGCGGcGCUGa -3'
miRNA:   3'- -CAAUUaGGaaUGCGGUCGCGUC-CGGC- -5'
17100 3' -53.6 NC_004333.2 + 21166 0.68 0.633253
Target:  5'- -gUGcgCUUcGCGCUGcCGCAGGCCGg -3'
miRNA:   3'- caAUuaGGAaUGCGGUcGCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 35903 0.68 0.621898
Target:  5'- --cAcgCCguuaUACGCCacaucGGCGaCAGGCCGa -3'
miRNA:   3'- caaUuaGGa---AUGCGG-----UCGC-GUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 43400 0.68 0.610553
Target:  5'- -aUGGUCCcgcagcCGCCcGCGCAGGCa- -3'
miRNA:   3'- caAUUAGGaau---GCGGuCGCGUCCGgc -5'
17100 3' -53.6 NC_004333.2 + 5826 0.68 0.599228
Target:  5'- ---cGUCCUUuuccAUGCCaaugaAGCGCcGGCCGg -3'
miRNA:   3'- caauUAGGAA----UGCGG-----UCGCGuCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 32475 0.68 0.599228
Target:  5'- --------cUGCGCgaGGCGCGGGCCGa -3'
miRNA:   3'- caauuaggaAUGCGg-UCGCGUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.