Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17100 | 3' | -53.6 | NC_004333.2 | + | 33388 | 0.66 | 0.744834 |
Target: 5'- -cUGAUCCguggcGCGCCGGUuggcucgauGC-GGCCGa -3' miRNA: 3'- caAUUAGGaa---UGCGGUCG---------CGuCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 9454 | 0.66 | 0.744834 |
Target: 5'- ---cGUCC-UGCGCaccaGGCGCGGGUg- -3' miRNA: 3'- caauUAGGaAUGCGg---UCGCGUCCGgc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 8871 | 0.66 | 0.734016 |
Target: 5'- --aGGUCUacaucACGCCGGCGCAaGGCa- -3' miRNA: 3'- caaUUAGGaa---UGCGGUCGCGU-CCGgc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 3600 | 0.66 | 0.734016 |
Target: 5'- cGUUGAUCCcgcuUUACGCCgaucAGCcGCAGcaGCUGa -3' miRNA: 3'- -CAAUUAGG----AAUGCGG----UCG-CGUC--CGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 22067 | 0.66 | 0.727473 |
Target: 5'- -cUGAUUCgcgccgACGCaaagaaaacggcccgCAGUGCGGGCCGu -3' miRNA: 3'- caAUUAGGaa----UGCG---------------GUCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 22437 | 0.66 | 0.712068 |
Target: 5'- ---cAUCCUcgGCGCgugCGGCGCAGGUUu -3' miRNA: 3'- caauUAGGAa-UGCG---GUCGCGUCCGGc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 43716 | 0.67 | 0.700963 |
Target: 5'- --cGAUCCU---GgUGGUGCAGGCCGg -3' miRNA: 3'- caaUUAGGAaugCgGUCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 1995 | 0.67 | 0.689785 |
Target: 5'- -gUAG-CgUUACGCCGGCGCGGaugauGCCc -3' miRNA: 3'- caAUUaGgAAUGCGGUCGCGUC-----CGGc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 3914 | 0.67 | 0.689785 |
Target: 5'- --aGcgCCagGCGgCAGCggcgGCAGGCCGa -3' miRNA: 3'- caaUuaGGaaUGCgGUCG----CGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 20978 | 0.67 | 0.689785 |
Target: 5'- --cAAUCCUgcGCGCCAaguagcacGCGCuGcGCCGg -3' miRNA: 3'- caaUUAGGAa-UGCGGU--------CGCGuC-CGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 9590 | 0.67 | 0.688664 |
Target: 5'- -----aCCUUcaGCGCCAGCcggcgcgGCAucGGCCGg -3' miRNA: 3'- caauuaGGAA--UGCGGUCG-------CGU--CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 11234 | 0.67 | 0.68305 |
Target: 5'- ----cUCCUUGCcggcgcucgagugcuGCCAGacggcccaaUGCAGGCCGa -3' miRNA: 3'- caauuAGGAAUG---------------CGGUC---------GCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 31380 | 0.67 | 0.667267 |
Target: 5'- --gGcgCCgugcucgGCGUCGGCGCAggugcGGCCGg -3' miRNA: 3'- caaUuaGGaa-----UGCGGUCGCGU-----CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 13542 | 0.67 | 0.655948 |
Target: 5'- -----gCgUUGcCGCCGGCGgcCAGGCCGg -3' miRNA: 3'- caauuaGgAAU-GCGGUCGC--GUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 5055 | 0.67 | 0.655948 |
Target: 5'- uGUUGG-CCg-ACGUCGGCGCGGcGCUGa -3' miRNA: 3'- -CAAUUaGGaaUGCGGUCGCGUC-CGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 21166 | 0.68 | 0.633253 |
Target: 5'- -gUGcgCUUcGCGCUGcCGCAGGCCGg -3' miRNA: 3'- caAUuaGGAaUGCGGUcGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 35903 | 0.68 | 0.621898 |
Target: 5'- --cAcgCCguuaUACGCCacaucGGCGaCAGGCCGa -3' miRNA: 3'- caaUuaGGa---AUGCGG-----UCGC-GUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 43400 | 0.68 | 0.610553 |
Target: 5'- -aUGGUCCcgcagcCGCCcGCGCAGGCa- -3' miRNA: 3'- caAUUAGGaau---GCGGuCGCGUCCGgc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 5826 | 0.68 | 0.599228 |
Target: 5'- ---cGUCCUUuuccAUGCCaaugaAGCGCcGGCCGg -3' miRNA: 3'- caauUAGGAA----UGCGG-----UCGCGuCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 32475 | 0.68 | 0.599228 |
Target: 5'- --------cUGCGCgaGGCGCGGGCCGa -3' miRNA: 3'- caauuaggaAUGCGg-UCGCGUCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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