Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17100 | 3' | -53.6 | NC_004333.2 | + | 795 | 0.76 | 0.233555 |
Target: 5'- cUUGAgcgugCCgguCGCCGGCGCAGGaCCGa -3' miRNA: 3'- cAAUUa----GGaauGCGGUCGCGUCC-GGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 872 | 0.69 | 0.549878 |
Target: 5'- --cGGUCC-UGCGCCGGCGaccggcacgcucaAGGUCGa -3' miRNA: 3'- caaUUAGGaAUGCGGUCGCg------------UCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 1995 | 0.67 | 0.689785 |
Target: 5'- -gUAG-CgUUACGCCGGCGCGGaugauGCCc -3' miRNA: 3'- caAUUaGgAAUGCGGUCGCGUC-----CGGc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 2009 | 0.73 | 0.34468 |
Target: 5'- -----cCCgcguCGCCGGUGCGGGCCa -3' miRNA: 3'- caauuaGGaau-GCGGUCGCGUCCGGc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 3600 | 0.66 | 0.734016 |
Target: 5'- cGUUGAUCCcgcuUUACGCCgaucAGCcGCAGcaGCUGa -3' miRNA: 3'- -CAAUUAGG----AAUGCGG----UCG-CGUC--CGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 3914 | 0.67 | 0.689785 |
Target: 5'- --aGcgCCagGCGgCAGCggcgGCAGGCCGa -3' miRNA: 3'- caaUuaGGaaUGCgGUCG----CGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 5055 | 0.67 | 0.655948 |
Target: 5'- uGUUGG-CCg-ACGUCGGCGCGGcGCUGa -3' miRNA: 3'- -CAAUUaGGaaUGCGGUCGCGUC-CGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 5826 | 0.68 | 0.599228 |
Target: 5'- ---cGUCCUUuuccAUGCCaaugaAGCGCcGGCCGg -3' miRNA: 3'- caauUAGGAA----UGCGG-----UCGCGuCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 7910 | 0.71 | 0.468106 |
Target: 5'- -----------gGCCGGCGCAGGCCGc -3' miRNA: 3'- caauuaggaaugCGGUCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 8871 | 0.66 | 0.734016 |
Target: 5'- --aGGUCUacaucACGCCGGCGCAaGGCa- -3' miRNA: 3'- caaUUAGGaa---UGCGGUCGCGU-CCGgc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 8954 | 0.71 | 0.437561 |
Target: 5'- ---uGUCCau-CGCguGCGCGGGCUGg -3' miRNA: 3'- caauUAGGaauGCGguCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 9454 | 0.66 | 0.744834 |
Target: 5'- ---cGUCC-UGCGCaccaGGCGCGGGUg- -3' miRNA: 3'- caauUAGGaAUGCGg---UCGCGUCCGgc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 9590 | 0.67 | 0.688664 |
Target: 5'- -----aCCUUcaGCGCCAGCcggcgcgGCAucGGCCGg -3' miRNA: 3'- caauuaGGAA--UGCGGUCG-------CGU--CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 11234 | 0.67 | 0.68305 |
Target: 5'- ----cUCCUUGCcggcgcucgagugcuGCCAGacggcccaaUGCAGGCCGa -3' miRNA: 3'- caauuAGGAAUG---------------CGGUC---------GCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 12311 | 0.7 | 0.49971 |
Target: 5'- ---cGUCCUgcGCGCCAgccucGCGCGGGuuGa -3' miRNA: 3'- caauUAGGAa-UGCGGU-----CGCGUCCggC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 12490 | 0.7 | 0.510456 |
Target: 5'- -----aCC-UACGuCCAGCGCuuGGCCGa -3' miRNA: 3'- caauuaGGaAUGC-GGUCGCGu-CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 13542 | 0.67 | 0.655948 |
Target: 5'- -----gCgUUGcCGCCGGCGgcCAGGCCGg -3' miRNA: 3'- caauuaGgAAU-GCGGUCGC--GUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 15199 | 0.78 | 0.167774 |
Target: 5'- --cAAUCCgcACgGCCGGCaGCAGGCCGg -3' miRNA: 3'- caaUUAGGaaUG-CGGUCG-CGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 17315 | 0.7 | 0.489066 |
Target: 5'- ---cGUCCUcAUGCgCGG-GCAGGCCGg -3' miRNA: 3'- caauUAGGAaUGCG-GUCgCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 20736 | 0.71 | 0.4578 |
Target: 5'- ---cAUCCcgUGCGCCuccugccacuGGCGCAGcGCCGu -3' miRNA: 3'- caauUAGGa-AUGCGG----------UCGCGUC-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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