miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17105 5' -59.6 NC_004333.2 + 689 1.1 0.00031
Target:  5'- gCUCGGUGAGCGCGAUCGUGCCGCCGCc -3'
miRNA:   3'- -GAGCCACUCGCGCUAGCACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 39280 0.78 0.075342
Target:  5'- gCUCGGccgacggGAGCGCGGgcCGUGCUGCCGg -3'
miRNA:   3'- -GAGCCa------CUCGCGCUa-GCACGGCGGCg -5'
17105 5' -59.6 NC_004333.2 + 9272 0.77 0.084244
Target:  5'- gUCGGUGcGCaccGCGAUCGacacUGCCGUCGCg -3'
miRNA:   3'- gAGCCACuCG---CGCUAGC----ACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 26652 0.77 0.09157
Target:  5'- gCUC-GUGAGCGUGAUCGcGCCgGCUGCc -3'
miRNA:   3'- -GAGcCACUCGCGCUAGCaCGG-CGGCG- -5'
17105 5' -59.6 NC_004333.2 + 29884 0.76 0.10228
Target:  5'- gUCGGcGAagcgcuGCGCGAUCGgGCCGCgCGCg -3'
miRNA:   3'- gAGCCaCU------CGCGCUAGCaCGGCG-GCG- -5'
17105 5' -59.6 NC_004333.2 + 41897 0.74 0.138106
Target:  5'- gCUCGcGgccGGGCGCcGUCGUGCCGUCGg -3'
miRNA:   3'- -GAGC-Ca--CUCGCGcUAGCACGGCGGCg -5'
17105 5' -59.6 NC_004333.2 + 25206 0.73 0.16221
Target:  5'- aUCGGgcaGGcCGCGAaCGUGCgCGCCGCc -3'
miRNA:   3'- gAGCCac-UC-GCGCUaGCACG-GCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 11187 0.73 0.171052
Target:  5'- -cCGGcGAG-GCGAuuUCGUGCCGCUGUu -3'
miRNA:   3'- gaGCCaCUCgCGCU--AGCACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 37264 0.73 0.171052
Target:  5'- aCUCGGcaccgGcGCGCGucgugagcggCGUGUCGCCGCg -3'
miRNA:   3'- -GAGCCa----CuCGCGCua--------GCACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 37880 0.72 0.210847
Target:  5'- -cCGGUGAGCGCu-UCG-GCCuGCuCGCg -3'
miRNA:   3'- gaGCCACUCGCGcuAGCaCGG-CG-GCG- -5'
17105 5' -59.6 NC_004333.2 + 48173 0.71 0.23959
Target:  5'- -gCGGUGcGCGCGccCGguUGCCGCCuGCg -3'
miRNA:   3'- gaGCCACuCGCGCuaGC--ACGGCGG-CG- -5'
17105 5' -59.6 NC_004333.2 + 39355 0.7 0.250083
Target:  5'- --gGGUGAGCagccaaccuGCGAUCGcgcgcgcgugcgccUGCCGgCCGCu -3'
miRNA:   3'- gagCCACUCG---------CGCUAGC--------------ACGGC-GGCG- -5'
17105 5' -59.6 NC_004333.2 + 29100 0.7 0.251974
Target:  5'- -gCGGUGcuCGCGcugguuAUCGUGCUaGCCGCg -3'
miRNA:   3'- gaGCCACucGCGC------UAGCACGG-CGGCG- -5'
17105 5' -59.6 NC_004333.2 + 25404 0.7 0.258362
Target:  5'- -cCGGcGAGCGCGccugcagCGUGCCgGCgGCg -3'
miRNA:   3'- gaGCCaCUCGCGCua-----GCACGG-CGgCG- -5'
17105 5' -59.6 NC_004333.2 + 18188 0.7 0.258362
Target:  5'- --gGGUGAuGCGCucGUCGUGCgCGCgGCa -3'
miRNA:   3'- gagCCACU-CGCGc-UAGCACG-GCGgCG- -5'
17105 5' -59.6 NC_004333.2 + 45723 0.7 0.258362
Target:  5'- uCUCGaGcccGGCGCGAaCGUGCCGaUCGCg -3'
miRNA:   3'- -GAGC-Cac-UCGCGCUaGCACGGC-GGCG- -5'
17105 5' -59.6 NC_004333.2 + 47061 0.7 0.283148
Target:  5'- cCUCGaguuugcgcgcaacGUGAGCGCGAUCuuuCgCGCCGCu -3'
miRNA:   3'- -GAGC--------------CACUCGCGCUAGcacG-GCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 44413 0.69 0.292293
Target:  5'- uCUCGGgcaGAuCGUGAUagcCGUguuGCCGCCGCa -3'
miRNA:   3'- -GAGCCa--CUcGCGCUA---GCA---CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 32321 0.69 0.292293
Target:  5'- gUCGGUcacGAGCGCGugcaCG-GCUGCCGg -3'
miRNA:   3'- gAGCCA---CUCGCGCua--GCaCGGCGGCg -5'
17105 5' -59.6 NC_004333.2 + 26475 0.69 0.292293
Target:  5'- aUCGucGUGAauGUGCGucgCGUGCCGCaCGCc -3'
miRNA:   3'- gAGC--CACU--CGCGCua-GCACGGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.