miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17105 5' -59.6 NC_004333.2 + 689 1.1 0.00031
Target:  5'- gCUCGGUGAGCGCGAUCGUGCCGCCGCc -3'
miRNA:   3'- -GAGCCACUCGCGCUAGCACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 3202 0.68 0.370326
Target:  5'- -cCGGUGAGC-CGGccCG-GCgCGCCGCc -3'
miRNA:   3'- gaGCCACUCGcGCUa-GCaCG-GCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 4793 0.66 0.471198
Target:  5'- --gGGUGAGCccGCGucgCGUGacgcucauaCGCCGCc -3'
miRNA:   3'- gagCCACUCG--CGCua-GCACg--------GCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 4842 0.68 0.345491
Target:  5'- gUCGGcUGAccguacGCGCGcgcCGUGCCgauGCCGCu -3'
miRNA:   3'- gAGCC-ACU------CGCGCua-GCACGG---CGGCG- -5'
17105 5' -59.6 NC_004333.2 + 5315 0.66 0.481057
Target:  5'- uUCGGgucuuucGCGCcuucgcgcugGAUCGUcacGCCGCCGUg -3'
miRNA:   3'- gAGCCacu----CGCG----------CUAGCA---CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 8674 0.67 0.414348
Target:  5'- -aCGGUGccgucggcguucAGCacgGCGAaCGUGCCGaCCGUg -3'
miRNA:   3'- gaGCCAC------------UCG---CGCUaGCACGGC-GGCG- -5'
17105 5' -59.6 NC_004333.2 + 9272 0.77 0.084244
Target:  5'- gUCGGUGcGCaccGCGAUCGacacUGCCGUCGCg -3'
miRNA:   3'- gAGCCACuCG---CGCUAGC----ACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 11187 0.73 0.171052
Target:  5'- -cCGGcGAG-GCGAuuUCGUGCCGCUGUu -3'
miRNA:   3'- gaGCCaCUCgCGCU--AGCACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 13902 0.67 0.399912
Target:  5'- -aCGGgcuGCGCGGcggcugccguggcgaUCGUgGCCGCUGCc -3'
miRNA:   3'- gaGCCacuCGCGCU---------------AGCA-CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 14088 0.66 0.461442
Target:  5'- -cUGaUGcAGCGCGAUCGUcauGCCGUCGa -3'
miRNA:   3'- gaGCcAC-UCGCGCUAGCA---CGGCGGCg -5'
17105 5' -59.6 NC_004333.2 + 14314 0.66 0.471198
Target:  5'- gCUCGaaaGAgGCGCGcgCGcacGCCGUCGCa -3'
miRNA:   3'- -GAGCca-CU-CGCGCuaGCa--CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 15866 0.66 0.491016
Target:  5'- cCUUGuGcGAGCccGCGAgCGaGCCGCCGUg -3'
miRNA:   3'- -GAGC-CaCUCG--CGCUaGCaCGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 17456 0.66 0.461442
Target:  5'- -cCGGaUGuGGCGCaacgCGaagGCCGCCGCg -3'
miRNA:   3'- gaGCC-AC-UCGCGcua-GCa--CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 17557 0.69 0.314274
Target:  5'- -gCGGUcGAGUGCGAgcagCGUGagCGCgGCg -3'
miRNA:   3'- gaGCCA-CUCGCGCUa---GCACg-GCGgCG- -5'
17105 5' -59.6 NC_004333.2 + 18188 0.7 0.258362
Target:  5'- --gGGUGAuGCGCucGUCGUGCgCGCgGCa -3'
miRNA:   3'- gagCCACU-CGCGc-UAGCACG-GCGgCG- -5'
17105 5' -59.6 NC_004333.2 + 19620 0.67 0.414348
Target:  5'- -aCGGcGAGCGCGGcgagCGcgGCCGaCGCu -3'
miRNA:   3'- gaGCCaCUCGCGCUa---GCa-CGGCgGCG- -5'
17105 5' -59.6 NC_004333.2 + 19927 0.68 0.345491
Target:  5'- aUCGacgacGAGCGCGccgggCGgcgaGCCGCCGCg -3'
miRNA:   3'- gAGCca---CUCGCGCua---GCa---CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 20723 0.66 0.491016
Target:  5'- -gCGGUGAugacgGCGCGcgCGcUGCCGgacaUCGCc -3'
miRNA:   3'- gaGCCACU-----CGCGCuaGC-ACGGC----GGCG- -5'
17105 5' -59.6 NC_004333.2 + 23176 0.68 0.378871
Target:  5'- gUCGGUcGGUGCGccguuuugcggaAUCGUGauacccguacCCGCCGCc -3'
miRNA:   3'- gAGCCAcUCGCGC------------UAGCAC----------GGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 25206 0.73 0.16221
Target:  5'- aUCGGgcaGGcCGCGAaCGUGCgCGCCGCc -3'
miRNA:   3'- gAGCCac-UC-GCGCUaGCACG-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.