miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17105 5' -59.6 NC_004333.2 + 29884 0.76 0.10228
Target:  5'- gUCGGcGAagcgcuGCGCGAUCGgGCCGCgCGCg -3'
miRNA:   3'- gAGCCaCU------CGCGCUAGCaCGGCG-GCG- -5'
17105 5' -59.6 NC_004333.2 + 48047 0.67 0.396354
Target:  5'- -cUGGUGGuuugugcucauGCGCGAugUCGUGCUGCuCGg -3'
miRNA:   3'- gaGCCACU-----------CGCGCU--AGCACGGCG-GCg -5'
17105 5' -59.6 NC_004333.2 + 13902 0.67 0.399912
Target:  5'- -aCGGgcuGCGCGGcggcugccguggcgaUCGUgGCCGCUGCc -3'
miRNA:   3'- gaGCCacuCGCGCU---------------AGCA-CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 15866 0.66 0.491016
Target:  5'- cCUUGuGcGAGCccGCGAgCGaGCCGCCGUg -3'
miRNA:   3'- -GAGC-CaCUCG--CGCUaGCaCGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 25404 0.7 0.258362
Target:  5'- -cCGGcGAGCGCGccugcagCGUGCCgGCgGCg -3'
miRNA:   3'- gaGCCaCUCGCGCua-----GCACGG-CGgCG- -5'
17105 5' -59.6 NC_004333.2 + 47061 0.7 0.283148
Target:  5'- cCUCGaguuugcgcgcaacGUGAGCGCGAUCuuuCgCGCCGCu -3'
miRNA:   3'- -GAGC--------------CACUCGCGCUAGcacG-GCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 32321 0.69 0.292293
Target:  5'- gUCGGUcacGAGCGCGugcaCG-GCUGCCGg -3'
miRNA:   3'- gAGCCA---CUCGCGCua--GCaCGGCGGCg -5'
17105 5' -59.6 NC_004333.2 + 43436 0.69 0.32961
Target:  5'- gUCGGgcugacgGAcGCGCGcAUCGcgcgcuUGCgCGCCGCa -3'
miRNA:   3'- gAGCCa------CU-CGCGC-UAGC------ACG-GCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 689 1.1 0.00031
Target:  5'- gCUCGGUGAGCGCGAUCGUGCCGCCGCc -3'
miRNA:   3'- -GAGCCACUCGCGCUAGCACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 41207 0.67 0.391055
Target:  5'- aCUC-GUGcGCGagggcuaccugucgcCGGUCGUGUCGCCGUc -3'
miRNA:   3'- -GAGcCACuCGC---------------GCUAGCACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 33083 0.68 0.353635
Target:  5'- aCUCGGUcAGCGUGAUCacgaGCCcuucGUCGCg -3'
miRNA:   3'- -GAGCCAcUCGCGCUAGca--CGG----CGGCG- -5'
17105 5' -59.6 NC_004333.2 + 19927 0.68 0.345491
Target:  5'- aUCGacgacGAGCGCGccgggCGgcgaGCCGCCGCg -3'
miRNA:   3'- gAGCca---CUCGCGCua---GCa---CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 37880 0.72 0.210847
Target:  5'- -cCGGUGAGCGCu-UCG-GCCuGCuCGCg -3'
miRNA:   3'- gaGCCACUCGCGcuAGCaCGG-CG-GCG- -5'
17105 5' -59.6 NC_004333.2 + 3202 0.68 0.370326
Target:  5'- -cCGGUGAGC-CGGccCG-GCgCGCCGCc -3'
miRNA:   3'- gaGCCACUCGcGCUa-GCaCG-GCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 18188 0.7 0.258362
Target:  5'- --gGGUGAuGCGCucGUCGUGCgCGCgGCa -3'
miRNA:   3'- gagCCACU-CGCGc-UAGCACG-GCGgCG- -5'
17105 5' -59.6 NC_004333.2 + 4842 0.68 0.345491
Target:  5'- gUCGGcUGAccguacGCGCGcgcCGUGCCgauGCCGCu -3'
miRNA:   3'- gAGCC-ACU------CGCGCua-GCACGG---CGGCG- -5'
17105 5' -59.6 NC_004333.2 + 23176 0.68 0.378871
Target:  5'- gUCGGUcGGUGCGccguuuugcggaAUCGUGauacccguacCCGCCGCc -3'
miRNA:   3'- gAGCCAcUCGCGC------------UAGCAC----------GGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 39063 0.67 0.396354
Target:  5'- -aCGGcGAguacGCGCGAcUCGUGC-GCCGUg -3'
miRNA:   3'- gaGCCaCU----CGCGCU-AGCACGgCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 45723 0.7 0.258362
Target:  5'- uCUCGaGcccGGCGCGAaCGUGCCGaUCGCg -3'
miRNA:   3'- -GAGC-Cac-UCGCGCUaGCACGGC-GGCG- -5'
17105 5' -59.6 NC_004333.2 + 26475 0.69 0.292293
Target:  5'- aUCGucGUGAauGUGCGucgCGUGCCGCaCGCc -3'
miRNA:   3'- gAGC--CACU--CGCGCua-GCACGGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.