miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17106 3' -55 NC_004333.2 + 13935 0.65 0.703333
Target:  5'- gCCGCUGCcGCCag-CGuggccGCCUUG-GCg -3'
miRNA:   3'- aGGUGACGuCGGgaaGC-----UGGAACuCG- -5'
17106 3' -55 NC_004333.2 + 25868 0.65 0.703333
Target:  5'- aUCUGCaGCAGCgCUUgGugCgcGAGCg -3'
miRNA:   3'- -AGGUGaCGUCGgGAAgCugGaaCUCG- -5'
17106 3' -55 NC_004333.2 + 12184 0.66 0.692323
Target:  5'- gCCGCUucuucCGGCgucucauugCCUUCGACCUUGccGGCc -3'
miRNA:   3'- aGGUGAc----GUCG---------GGAAGCUGGAAC--UCG- -5'
17106 3' -55 NC_004333.2 + 41502 0.66 0.681253
Target:  5'- cCCGCgucgaGCAGCgCCUguUCGAUCaUGuGCg -3'
miRNA:   3'- aGGUGa----CGUCG-GGA--AGCUGGaACuCG- -5'
17106 3' -55 NC_004333.2 + 188 0.66 0.681253
Target:  5'- gUCCACUGCccgugcGCCCgcCGGCUU--GGCu -3'
miRNA:   3'- -AGGUGACGu-----CGGGaaGCUGGAacUCG- -5'
17106 3' -55 NC_004333.2 + 22292 0.66 0.658978
Target:  5'- gUCUcuUUGCGGCCCgucUCGGCaucGAGCa -3'
miRNA:   3'- -AGGu-GACGUCGGGa--AGCUGgaaCUCG- -5'
17106 3' -55 NC_004333.2 + 26870 0.66 0.647796
Target:  5'- -aCACUGCgAGCCCgaugUC-ACCUUcugccggaucGAGCa -3'
miRNA:   3'- agGUGACG-UCGGGa---AGcUGGAA----------CUCG- -5'
17106 3' -55 NC_004333.2 + 17181 0.66 0.645557
Target:  5'- gCCGCUGCgAGCCC--CGAUCUguuuaucgucgcGGGCg -3'
miRNA:   3'- aGGUGACG-UCGGGaaGCUGGAa-----------CUCG- -5'
17106 3' -55 NC_004333.2 + 46360 0.67 0.636599
Target:  5'- gCCGCUGCGGaUUUggcgCGGCCUaggacagucggUGAGCa -3'
miRNA:   3'- aGGUGACGUCgGGAa---GCUGGA-----------ACUCG- -5'
17106 3' -55 NC_004333.2 + 39017 0.67 0.603025
Target:  5'- -gCGCUGCAGCUgUUCG-CCga-GGCa -3'
miRNA:   3'- agGUGACGUCGGgAAGCuGGaacUCG- -5'
17106 3' -55 NC_004333.2 + 41604 0.68 0.580755
Target:  5'- -gCACUGCGGCCCacgcgcucgcUCGugCUcuGGCg -3'
miRNA:   3'- agGUGACGUCGGGa---------AGCugGAacUCG- -5'
17106 3' -55 NC_004333.2 + 38621 0.68 0.569682
Target:  5'- gCCGCUGCccgugguGCCCguucugaUCGGCCc-GGGCg -3'
miRNA:   3'- aGGUGACGu------CGGGa------AGCUGGaaCUCG- -5'
17106 3' -55 NC_004333.2 + 42222 0.68 0.569682
Target:  5'- -aCGCUGUuGCCC-UCGGgCgUGAGCg -3'
miRNA:   3'- agGUGACGuCGGGaAGCUgGaACUCG- -5'
17106 3' -55 NC_004333.2 + 18576 0.68 0.547702
Target:  5'- gCCGCUGCAGCguCCgUCGGCgUgccGGCa -3'
miRNA:   3'- aGGUGACGUCG--GGaAGCUGgAac-UCG- -5'
17106 3' -55 NC_004333.2 + 18517 0.68 0.536811
Target:  5'- -aCGCUGCAGCggCCUUCGcaGCCggcGGCa -3'
miRNA:   3'- agGUGACGUCG--GGAAGC--UGGaacUCG- -5'
17106 3' -55 NC_004333.2 + 45466 0.69 0.473294
Target:  5'- gCCAgguCUGCGGCCUUgcCGACCU--GGCg -3'
miRNA:   3'- aGGU---GACGUCGGGAa-GCUGGAacUCG- -5'
17106 3' -55 NC_004333.2 + 33870 0.7 0.46307
Target:  5'- gCUGCUGCAGCCgagUCGGCC---AGCg -3'
miRNA:   3'- aGGUGACGUCGGga-AGCUGGaacUCG- -5'
17106 3' -55 NC_004333.2 + 12937 0.7 0.46307
Target:  5'- -gCACUGCAgGCCCa--GGCCcagGAGCa -3'
miRNA:   3'- agGUGACGU-CGGGaagCUGGaa-CUCG- -5'
17106 3' -55 NC_004333.2 + 24500 0.7 0.433115
Target:  5'- -gCGCUGCuGGCCUcaUUCGACCagUGGGUc -3'
miRNA:   3'- agGUGACG-UCGGG--AAGCUGGa-ACUCG- -5'
17106 3' -55 NC_004333.2 + 18057 0.7 0.413783
Target:  5'- cCCGCUGCuGCgCagucCGACCUcUGGGCg -3'
miRNA:   3'- aGGUGACGuCGgGaa--GCUGGA-ACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.