miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17106 5' -58 NC_004333.2 + 812 1.05 0.000739
Target:  5'- cCGGCGCAGGACCGAACAGCUGCACUUc -3'
miRNA:   3'- -GCCGCGUCCUGGCUUGUCGACGUGAA- -5'
17106 5' -58 NC_004333.2 + 21437 0.8 0.05682
Target:  5'- gCGGCGCAGGACgCGGACGGaaCUGUACa- -3'
miRNA:   3'- -GCCGCGUCCUG-GCUUGUC--GACGUGaa -5'
17106 5' -58 NC_004333.2 + 46000 0.75 0.120232
Target:  5'- uCGGCGCcgAGGGCUGGcACGGCcUGCGCUg -3'
miRNA:   3'- -GCCGCG--UCCUGGCU-UGUCG-ACGUGAa -5'
17106 5' -58 NC_004333.2 + 20580 0.75 0.127207
Target:  5'- gCGGCGCGGcggcGGCCGGcaGCGGUUGCGCg- -3'
miRNA:   3'- -GCCGCGUC----CUGGCU--UGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 9513 0.73 0.162996
Target:  5'- gGuGCGCAGGAcggcgaaCCGGACGGCgUGCGCa- -3'
miRNA:   3'- gC-CGCGUCCU-------GGCUUGUCG-ACGUGaa -5'
17106 5' -58 NC_004333.2 + 9703 0.73 0.177458
Target:  5'- gGGCGCAGGcgcGCCGccGGCAGCcggUGCGCa- -3'
miRNA:   3'- gCCGCGUCC---UGGC--UUGUCG---ACGUGaa -5'
17106 5' -58 NC_004333.2 + 13646 0.72 0.192527
Target:  5'- -cGCGCGGuACuCGGGCAGCUGCGCg- -3'
miRNA:   3'- gcCGCGUCcUG-GCUUGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 41743 0.71 0.238274
Target:  5'- uCGGCGCGGGcgacucgcgcGCCGGGCuaugGGuCUGCACg- -3'
miRNA:   3'- -GCCGCGUCC----------UGGCUUG----UC-GACGUGaa -5'
17106 5' -58 NC_004333.2 + 20732 0.71 0.238274
Target:  5'- aCGGCGCGcgcgcugccGGacaucGCCGAcGCGGCUGCGCg- -3'
miRNA:   3'- -GCCGCGU---------CC-----UGGCU-UGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 6416 0.71 0.242682
Target:  5'- cCGGCGCAucguaaaaucgcgcGGugCGGucguccucACGGCUGCGCa- -3'
miRNA:   3'- -GCCGCGU--------------CCugGCU--------UGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 5067 0.71 0.244593
Target:  5'- uCGGCGCGGcGCUGAACAGCgucaGCAg-- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGUCGa---CGUgaa -5'
17106 5' -58 NC_004333.2 + 31364 0.71 0.251049
Target:  5'- uCGGCGCAGGugCGGccggucucgccgGCAugguGCUuGCACUg -3'
miRNA:   3'- -GCCGCGUCCugGCU------------UGU----CGA-CGUGAa -5'
17106 5' -58 NC_004333.2 + 9604 0.71 0.257646
Target:  5'- cCGGCGCGGcAUCGGcCGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUuGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 30407 0.71 0.257646
Target:  5'- cCGGCGCcGGACCGAAUucGC-GCGCc- -3'
miRNA:   3'- -GCCGCGuCCUGGCUUGu-CGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 48094 0.7 0.292768
Target:  5'- aGGCGCAGGcggcaACCGGGCGcGC-GCACc- -3'
miRNA:   3'- gCCGCGUCC-----UGGCUUGU-CGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 17562 0.69 0.30783
Target:  5'- uCGGUGCGGucgaGugCGAGCAGCgugaGCGCg- -3'
miRNA:   3'- -GCCGCGUC----CugGCUUGUCGa---CGUGaa -5'
17106 5' -58 NC_004333.2 + 7513 0.69 0.323477
Target:  5'- aCGGCGUcGGGCCGucucguGCAGCUcuggGCGCc- -3'
miRNA:   3'- -GCCGCGuCCUGGCu-----UGUCGA----CGUGaa -5'
17106 5' -58 NC_004333.2 + 26616 0.68 0.365147
Target:  5'- cCGGCGCGGGcuCCGuGCAGUUcgccGCACc- -3'
miRNA:   3'- -GCCGCGUCCu-GGCuUGUCGA----CGUGaa -5'
17106 5' -58 NC_004333.2 + 38950 0.68 0.365147
Target:  5'- gCGGCGCGGGugCGcggacgGGCGGCguucguaugGCGCc- -3'
miRNA:   3'- -GCCGCGUCCugGC------UUGUCGa--------CGUGaa -5'
17106 5' -58 NC_004333.2 + 13972 0.68 0.391871
Target:  5'- gCGGCgGCcGGugCGcGCgAGCUGCGCg- -3'
miRNA:   3'- -GCCG-CGuCCugGCuUG-UCGACGUGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.