miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17106 5' -58 NC_004333.2 + 812 1.05 0.000739
Target:  5'- cCGGCGCAGGACCGAACAGCUGCACUUc -3'
miRNA:   3'- -GCCGCGUCCUGGCUUGUCGACGUGAA- -5'
17106 5' -58 NC_004333.2 + 24441 0.66 0.489494
Target:  5'- aGGCcaGCAGcgccagcaaGACCGGGCuguuGCUGUACUg -3'
miRNA:   3'- gCCG--CGUC---------CUGGCUUGu---CGACGUGAa -5'
17106 5' -58 NC_004333.2 + 15211 0.66 0.489494
Target:  5'- cCGGCaGCAGG-CCGGucagACGGCcGUACa- -3'
miRNA:   3'- -GCCG-CGUCCuGGCU----UGUCGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 6827 0.66 0.509332
Target:  5'- gCGGCacuccgGCGGGgcacucgucggcuACCG-GCGGCUGCGCa- -3'
miRNA:   3'- -GCCG------CGUCC-------------UGGCuUGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 20732 0.71 0.238274
Target:  5'- aCGGCGCGcgcgcugccGGacaucGCCGAcGCGGCUGCGCg- -3'
miRNA:   3'- -GCCGCGU---------CC-----UGGCU-UGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 41743 0.71 0.238274
Target:  5'- uCGGCGCGGGcgacucgcgcGCCGGGCuaugGGuCUGCACg- -3'
miRNA:   3'- -GCCGCGUCC----------UGGCUUG----UC-GACGUGaa -5'
17106 5' -58 NC_004333.2 + 30407 0.71 0.257646
Target:  5'- cCGGCGCcGGACCGAAUucGC-GCGCc- -3'
miRNA:   3'- -GCCGCGuCCUGGCUUGu-CGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 9604 0.71 0.257646
Target:  5'- cCGGCGCGGcAUCGGcCGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUuGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 30776 0.67 0.401057
Target:  5'- aCGGCGCGGcGACCGucauGACGacguucgccauGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUC-CUGGC----UUGU-----------CGACGUGaa -5'
17106 5' -58 NC_004333.2 + 1644 0.67 0.448976
Target:  5'- gCGGCGUAGccCUGAAUGcGCUGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGU-CGACGUGaa -5'
17106 5' -58 NC_004333.2 + 13972 0.68 0.391871
Target:  5'- gCGGCgGCcGGugCGcGCgAGCUGCGCg- -3'
miRNA:   3'- -GCCG-CGuCCugGCuUG-UCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 21437 0.8 0.05682
Target:  5'- gCGGCGCAGGACgCGGACGGaaCUGUACa- -3'
miRNA:   3'- -GCCGCGUCCUG-GCUUGUC--GACGUGaa -5'
17106 5' -58 NC_004333.2 + 9467 0.66 0.458936
Target:  5'- aGGCGCGGGugccgcaccgccGCCGAGCuGCUcgaGCUUc -3'
miRNA:   3'- gCCGCGUCC------------UGGCUUGuCGAcg-UGAA- -5'
17106 5' -58 NC_004333.2 + 46000 0.75 0.120232
Target:  5'- uCGGCGCcgAGGGCUGGcACGGCcUGCGCUg -3'
miRNA:   3'- -GCCGCG--UCCUGGCU-UGUCG-ACGUGAa -5'
17106 5' -58 NC_004333.2 + 48094 0.7 0.292768
Target:  5'- aGGCGCAGGcggcaACCGGGCGcGC-GCACc- -3'
miRNA:   3'- gCCGCGUCC-----UGGCUUGU-CGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 362 0.66 0.469011
Target:  5'- uCGGCGCu---UUGAACAGCUGCAg-- -3'
miRNA:   3'- -GCCGCGuccuGGCUUGUCGACGUgaa -5'
17106 5' -58 NC_004333.2 + 23103 0.66 0.489494
Target:  5'- uCGGuUGCGucGGCUGAACGGCgGCACUg -3'
miRNA:   3'- -GCC-GCGUc-CUGGCUUGUCGaCGUGAa -5'
17106 5' -58 NC_004333.2 + 13646 0.72 0.192527
Target:  5'- -cGCGCGGuACuCGGGCAGCUGCGCg- -3'
miRNA:   3'- gcCGCGUCcUG-GCUUGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 5067 0.71 0.244593
Target:  5'- uCGGCGCGGcGCUGAACAGCgucaGCAg-- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGUCGa---CGUgaa -5'
17106 5' -58 NC_004333.2 + 20676 0.67 0.41038
Target:  5'- aGGCGCAcGGgaugacGCCGGAUGGCgUGUACg- -3'
miRNA:   3'- gCCGCGU-CC------UGGCUUGUCG-ACGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.