miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17106 5' -58 NC_004333.2 + 362 0.66 0.469011
Target:  5'- uCGGCGCu---UUGAACAGCUGCAg-- -3'
miRNA:   3'- -GCCGCGuccuGGCUUGUCGACGUgaa -5'
17106 5' -58 NC_004333.2 + 812 1.05 0.000739
Target:  5'- cCGGCGCAGGACCGAACAGCUGCACUUc -3'
miRNA:   3'- -GCCGCGUCCUGGCUUGUCGACGUGAA- -5'
17106 5' -58 NC_004333.2 + 1644 0.67 0.448976
Target:  5'- gCGGCGUAGccCUGAAUGcGCUGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGU-CGACGUGaa -5'
17106 5' -58 NC_004333.2 + 5067 0.71 0.244593
Target:  5'- uCGGCGCGGcGCUGAACAGCgucaGCAg-- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGUCGa---CGUgaa -5'
17106 5' -58 NC_004333.2 + 5960 0.67 0.400133
Target:  5'- aCGGUGCuGGACaacugcaUGGGCAGCgGCACc- -3'
miRNA:   3'- -GCCGCGuCCUG-------GCUUGUCGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 6416 0.71 0.242682
Target:  5'- cCGGCGCAucguaaaaucgcgcGGugCGGucguccucACGGCUGCGCa- -3'
miRNA:   3'- -GCCGCGU--------------CCugGCU--------UGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 6827 0.66 0.509332
Target:  5'- gCGGCacuccgGCGGGgcacucgucggcuACCG-GCGGCUGCGCa- -3'
miRNA:   3'- -GCCG------CGUCC-------------UGGCuUGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 7513 0.69 0.323477
Target:  5'- aCGGCGUcGGGCCGucucguGCAGCUcuggGCGCc- -3'
miRNA:   3'- -GCCGCGuCCUGGCu-----UGUCGA----CGUGaa -5'
17106 5' -58 NC_004333.2 + 9467 0.66 0.458936
Target:  5'- aGGCGCGGGugccgcaccgccGCCGAGCuGCUcgaGCUUc -3'
miRNA:   3'- gCCGCGUCC------------UGGCUUGuCGAcg-UGAA- -5'
17106 5' -58 NC_004333.2 + 9513 0.73 0.162996
Target:  5'- gGuGCGCAGGAcggcgaaCCGGACGGCgUGCGCa- -3'
miRNA:   3'- gC-CGCGUCCU-------GGCUUGUCG-ACGUGaa -5'
17106 5' -58 NC_004333.2 + 9604 0.71 0.257646
Target:  5'- cCGGCGCGGcAUCGGcCGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUuGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 9703 0.73 0.177458
Target:  5'- gGGCGCAGGcgcGCCGccGGCAGCcggUGCGCa- -3'
miRNA:   3'- gCCGCGUCC---UGGC--UUGUCG---ACGUGaa -5'
17106 5' -58 NC_004333.2 + 12455 0.66 0.479199
Target:  5'- uGGCGCGccGGGCgGGGCgcgGGCggGCGCUa -3'
miRNA:   3'- gCCGCGU--CCUGgCUUG---UCGa-CGUGAa -5'
17106 5' -58 NC_004333.2 + 13646 0.72 0.192527
Target:  5'- -cGCGCGGuACuCGGGCAGCUGCGCg- -3'
miRNA:   3'- gcCGCGUCcUG-GCUUGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 13972 0.68 0.391871
Target:  5'- gCGGCgGCcGGugCGcGCgAGCUGCGCg- -3'
miRNA:   3'- -GCCG-CGuCCugGCuUG-UCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 15211 0.66 0.489494
Target:  5'- cCGGCaGCAGG-CCGGucagACGGCcGUACa- -3'
miRNA:   3'- -GCCG-CGUCCuGGCU----UGUCGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 16734 0.67 0.439138
Target:  5'- gCGGUGCAGcACCGGGCAggucgaaguGCUGuCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGU---------CGAC-GUGaa -5'
17106 5' -58 NC_004333.2 + 17562 0.69 0.30783
Target:  5'- uCGGUGCGGucgaGugCGAGCAGCgugaGCGCg- -3'
miRNA:   3'- -GCCGCGUC----CugGCUUGUCGa---CGUGaa -5'
17106 5' -58 NC_004333.2 + 19966 0.66 0.510386
Target:  5'- aCGGCGCGGauGGCCcaGAGCuGCUgaGCGCg- -3'
miRNA:   3'- -GCCGCGUC--CUGG--CUUGuCGA--CGUGaa -5'
17106 5' -58 NC_004333.2 + 20580 0.75 0.127207
Target:  5'- gCGGCGCGGcggcGGCCGGcaGCGGUUGCGCg- -3'
miRNA:   3'- -GCCGCGUC----CUGGCU--UGUCGACGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.