Results 1 - 20 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 12519 | 0.66 | 0.581614 |
Target: 5'- cGGCCGACGACGauaUCGaCGGugUGCUCAc -3' miRNA: 3'- -CCGGCUGUUGCac-GGCaGCU--ACGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 26286 | 0.66 | 0.592423 |
Target: 5'- uGGCgCG-CAcCGcGCCGUCGAUGCg-- -3' miRNA: 3'- -CCG-GCuGUuGCaCGGCAGCUACGggu -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 42099 | 0.66 | 0.592423 |
Target: 5'- uGCgCGACGagGCGUGUCGcgaGGUGCgCCAg -3' miRNA: 3'- cCG-GCUGU--UGCACGGCag-CUACG-GGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 22356 | 0.66 | 0.580535 |
Target: 5'- aGCCGACGaaaccugcgccgcACGcGCCGagGAUGgCCGu -3' miRNA: 3'- cCGGCUGU-------------UGCaCGGCagCUACgGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 26477 | 0.66 | 0.592423 |
Target: 5'- cGUCGugAAUGUG-CGUCGcGUGCCgCAc -3' miRNA: 3'- cCGGCugUUGCACgGCAGC-UACGG-GU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 19639 | 0.66 | 0.592423 |
Target: 5'- cGGCCGACGcUG-GCCGUCaacaGCUCGc -3' miRNA: 3'- -CCGGCUGUuGCaCGGCAGcua-CGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 622 | 0.66 | 0.570845 |
Target: 5'- -cCCGACAGCGgGCCGgugcugccagUGAcGCCCGu -3' miRNA: 3'- ccGGCUGUUGCaCGGCa---------GCUaCGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 45730 | 0.66 | 0.560125 |
Target: 5'- -cCCGGCGcgaACGUGCCGaucgCGAUauacgacaaGCCCGa -3' miRNA: 3'- ccGGCUGU---UGCACGGCa---GCUA---------CGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 8100 | 0.66 | 0.581614 |
Target: 5'- gGGUCGACGuag-GUCGUCagguaguucggGAUGCCCGa -3' miRNA: 3'- -CCGGCUGUugcaCGGCAG-----------CUACGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 21779 | 0.66 | 0.560125 |
Target: 5'- uGCUGGCGcACGUGCgcauagagcgCGUCGAgcUGCUCGg -3' miRNA: 3'- cCGGCUGU-UGCACG----------GCAGCU--ACGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 47528 | 0.66 | 0.560125 |
Target: 5'- cGCCGGC-GCGuUGCUaGUCGAUGCgUCGa -3' miRNA: 3'- cCGGCUGuUGC-ACGG-CAGCUACG-GGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 8223 | 0.66 | 0.569771 |
Target: 5'- cGGCCGACcuguCGccacaccUGUCGUCGAcggGCUCGu -3' miRNA: 3'- -CCGGCUGuu--GC-------ACGGCAGCUa--CGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 7796 | 0.66 | 0.570845 |
Target: 5'- cGGCCuGAuCAACGauCCGUCGcUGUCCGc -3' miRNA: 3'- -CCGG-CU-GUUGCacGGCAGCuACGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 15208 | 0.66 | 0.559056 |
Target: 5'- cGGCCGGCAgcaggccggucagACG-GCCGUacagauagGGUGCCa- -3' miRNA: 3'- -CCGGCUGU-------------UGCaCGGCAg-------CUACGGgu -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 48064 | 0.67 | 0.517882 |
Target: 5'- uGCgCGAUGuCGUGCUGcUCGGUGCCg- -3' miRNA: 3'- cCG-GCUGUuGCACGGC-AGCUACGGgu -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 12359 | 0.67 | 0.497234 |
Target: 5'- cGCCG-CAauGCGcGCCGcCGGUGCCg- -3' miRNA: 3'- cCGGCuGU--UGCaCGGCaGCUACGGgu -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 30259 | 0.67 | 0.517882 |
Target: 5'- cGGCaaACGGCGUGCgCGaguccgacUUGGUGCCCu -3' miRNA: 3'- -CCGgcUGUUGCACG-GC--------AGCUACGGGu -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 938 | 0.67 | 0.517882 |
Target: 5'- cGCCaACGGCGUcGUC-UCGGUGCCUAu -3' miRNA: 3'- cCGGcUGUUGCA-CGGcAGCUACGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 2413 | 0.67 | 0.549462 |
Target: 5'- aGCUGcGCAACG-GCCGcaCGGUGCUCGc -3' miRNA: 3'- cCGGC-UGUUGCaCGGCa-GCUACGGGU- -5' |
|||||||
17108 | 5' | -57.3 | NC_004333.2 | + | 20579 | 0.67 | 0.549462 |
Target: 5'- cGGCgCGGCGGCG-GCCGgcagCGGuUGCgCGg -3' miRNA: 3'- -CCG-GCUGUUGCaCGGCa---GCU-ACGgGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home