Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 39879 | 0.66 | 0.892206 |
Target: 5'- gGGUAUGCgcgUUCGGACGgccacAGCGCGAGc -3' miRNA: 3'- -CCAUGCG---GGGCUUGCaa---UCGUGUUCa -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 33689 | 0.66 | 0.884649 |
Target: 5'- --gACGCCCCcuGCGguagaUGGUACAAGc -3' miRNA: 3'- ccaUGCGGGGcuUGCa----AUCGUGUUCa -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 41939 | 0.66 | 0.884649 |
Target: 5'- gGGUGCGgcuaCCUGAACGacgcugAGCACAu-- -3' miRNA: 3'- -CCAUGCg---GGGCUUGCaa----UCGUGUuca -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 648 | 0.66 | 0.876816 |
Target: 5'- --gACGCCCgUGAACGUgaaaCGCAAGg -3' miRNA: 3'- ccaUGCGGG-GCUUGCAauc-GUGUUCa -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 46816 | 0.66 | 0.871986 |
Target: 5'- cGUGCGCaacaCGAACGUgcucggcaucgaacGGCACAAGc -3' miRNA: 3'- cCAUGCGgg--GCUUGCAa-------------UCGUGUUCa -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 5532 | 0.66 | 0.868713 |
Target: 5'- aGGUcAUGCCguggCCGGcgACGgcuUGGCGCGAGUg -3' miRNA: 3'- -CCA-UGCGG----GGCU--UGCa--AUCGUGUUCA- -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 20237 | 0.66 | 0.868713 |
Target: 5'- uGUGCG-CCCGAGcCGgcGGC-CGAGUa -3' miRNA: 3'- cCAUGCgGGGCUU-GCaaUCGuGUUCA- -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 9514 | 0.66 | 0.868713 |
Target: 5'- uGGUGCGCaggacggcgaaCCGGACGgcguGCGCAGc- -3' miRNA: 3'- -CCAUGCGg----------GGCUUGCaau-CGUGUUca -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 41322 | 0.66 | 0.860349 |
Target: 5'- cGGcGCGCgaUGGACGUgacGCGCGAGUg -3' miRNA: 3'- -CCaUGCGggGCUUGCAau-CGUGUUCA- -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 33423 | 0.66 | 0.851731 |
Target: 5'- -cUGCGCgCCGAACcgUAGcCGCGAGUc -3' miRNA: 3'- ccAUGCGgGGCUUGcaAUC-GUGUUCA- -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 43586 | 0.66 | 0.851731 |
Target: 5'- ---uCGCCUCGAACGcgaguGCGCGAGc -3' miRNA: 3'- ccauGCGGGGCUUGCaau--CGUGUUCa -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 37176 | 0.66 | 0.851731 |
Target: 5'- --cACGCCCCGcagcugcccGACGUccucgaUAGCGCGAa- -3' miRNA: 3'- ccaUGCGGGGC---------UUGCA------AUCGUGUUca -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 21254 | 0.67 | 0.833768 |
Target: 5'- --aAUGCCCCGAgcaggccggccuGCGgcAGCGCGAa- -3' miRNA: 3'- ccaUGCGGGGCU------------UGCaaUCGUGUUca -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 19937 | 0.67 | 0.824442 |
Target: 5'- --aGCGCgCCGGGCGgcgAGCcgccGCGAGUg -3' miRNA: 3'- ccaUGCGgGGCUUGCaa-UCG----UGUUCA- -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 20993 | 0.67 | 0.814901 |
Target: 5'- gGGUGCGUUUCGAGCGcgUGGCAg---- -3' miRNA: 3'- -CCAUGCGGGGCUUGCa-AUCGUguuca -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 773 | 0.67 | 0.805155 |
Target: 5'- --gGCGCUCgCGGGCGgcGGCACGAu- -3' miRNA: 3'- ccaUGCGGG-GCUUGCaaUCGUGUUca -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 11286 | 0.67 | 0.805155 |
Target: 5'- aGGagcCGCgCCCGAaucACGUgcGCGCGGGUc -3' miRNA: 3'- -CCau-GCG-GGGCU---UGCAauCGUGUUCA- -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 8315 | 0.67 | 0.805155 |
Target: 5'- gGGgcucGCGCCCCGcuauGCGUUAcGCGCccGUa -3' miRNA: 3'- -CCa---UGCGGGGCu---UGCAAU-CGUGuuCA- -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 18494 | 0.67 | 0.804169 |
Target: 5'- cGGUgucgACGCCgCCGAucgcgagGCGUUgcgcuucggacGGCACGAGc -3' miRNA: 3'- -CCA----UGCGG-GGCU-------UGCAA-----------UCGUGUUCa -5' |
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17120 | 5' | -51.5 | NC_004333.2 | + | 31382 | 0.68 | 0.795216 |
Target: 5'- cGG-GCGCCgUGcucGGCGUcGGCGCAGGUg -3' miRNA: 3'- -CCaUGCGGgGC---UUGCAaUCGUGUUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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