miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 25972 0.74 0.243173
Target:  5'- aAGCGCAGGgcgGCGaaGCGCGGCgcUUGGCg -3'
miRNA:   3'- -UCGCGUUCa--UGC--UGCGCCGguAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31307 0.74 0.243173
Target:  5'- cGGCGC---UGCGccGCGCGGCCGUCGcGCc -3'
miRNA:   3'- -UCGCGuucAUGC--UGCGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 29913 0.74 0.248975
Target:  5'- cGCuGCGaacgaucAGUcgacugGCGGCGCGGCgAUCAGCa -3'
miRNA:   3'- uCG-CGU-------UCA------UGCUGCGCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 9595 0.74 0.249627
Target:  5'- cAGCGCcAGc-CGGCGCGGC-AUCGGCc -3'
miRNA:   3'- -UCGCGuUCauGCUGCGCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 33348 0.74 0.256221
Target:  5'- uGCGCGAGaACGGCGCG-CCGUCGu- -3'
miRNA:   3'- uCGCGUUCaUGCUGCGCcGGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 29786 0.73 0.269838
Target:  5'- uGGCGCGGGUcguucGCGACGaCGGUCAcCGGg -3'
miRNA:   3'- -UCGCGUUCA-----UGCUGC-GCCGGUaGUCg -5'
17137 5' -55.4 NC_004333.2 + 23905 0.73 0.276862
Target:  5'- uGCGgAAGccgaACGGCGCGuaCGUCAGCg -3'
miRNA:   3'- uCGCgUUCa---UGCUGCGCcgGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29997 0.73 0.276862
Target:  5'- gAGCGCGAGcaccaUGCGGCGCcGCuCGUCGGg -3'
miRNA:   3'- -UCGCGUUC-----AUGCUGCGcCG-GUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 10747 0.73 0.284031
Target:  5'- cGGCGUAucGUACcGCGCGGCC--CGGCg -3'
miRNA:   3'- -UCGCGUu-CAUGcUGCGCCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19634 0.73 0.284031
Target:  5'- gAGCGCGGc--CGACGCuGGCCGUCAacaGCu -3'
miRNA:   3'- -UCGCGUUcauGCUGCG-CCGGUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 20586 0.73 0.284031
Target:  5'- cAGCGagcGGcGCGGCgGCGGCCggCAGCg -3'
miRNA:   3'- -UCGCgu-UCaUGCUG-CGCCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27478 0.73 0.284756
Target:  5'- cGCGCAGGguuacggcaaacaugACGGCaCGGCCGUCGcGCc -3'
miRNA:   3'- uCGCGUUCa--------------UGCUGcGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 19624 0.73 0.298809
Target:  5'- cGCGCcgaccGUGCGACcgGCGcCCAUCAGCu -3'
miRNA:   3'- uCGCGuu---CAUGCUG--CGCcGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 25409 0.72 0.306418
Target:  5'- gAGCGCGccugcagcGUGcCGGCgGCGGCCGUCAcGCc -3'
miRNA:   3'- -UCGCGUu-------CAU-GCUG-CGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 32283 0.72 0.313392
Target:  5'- uGGCGCGGGUcgGCGGCGauGUCgacgugcGUCAGCa -3'
miRNA:   3'- -UCGCGUUCA--UGCUGCgcCGG-------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 11974 0.72 0.314174
Target:  5'- cGCGCGucgACGAuCGCGGCCGUaucGCg -3'
miRNA:   3'- uCGCGUucaUGCU-GCGCCGGUAgu-CG- -5'
17137 5' -55.4 NC_004333.2 + 18327 0.72 0.314174
Target:  5'- uGUGCAGGguucUGCGGauuagcaGCGuGCCGUCGGCg -3'
miRNA:   3'- uCGCGUUC----AUGCUg------CGC-CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 38301 0.72 0.322079
Target:  5'- cGCGCGAccGUGC-ACGCGGCgAcCGGCg -3'
miRNA:   3'- uCGCGUU--CAUGcUGCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 38949 0.72 0.346676
Target:  5'- cGGCGCGGGUGCGcggacGgGCGGCguUCguauGGCg -3'
miRNA:   3'- -UCGCGUUCAUGC-----UgCGCCGguAG----UCG- -5'
17137 5' -55.4 NC_004333.2 + 5128 0.72 0.346676
Target:  5'- cAGCGCcgcgcCGACGuCGGCCAaCAGCc -3'
miRNA:   3'- -UCGCGuucauGCUGC-GCCGGUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.