miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17156 5' -46.8 NC_004333.2 + 13106 0.66 0.991232
Target:  5'- gUCGGGcAUCUUGAUggaccuCGCGCagGCGUUGa -3'
miRNA:   3'- -AGCUUuUAGAGUUGu-----GCGCG--UGCAAC- -5'
17156 5' -46.8 NC_004333.2 + 17246 0.66 0.991232
Target:  5'- aUCGggGcUCgCAGCggccuugucgACGCGCACGa-- -3'
miRNA:   3'- -AGCuuUuAGaGUUG----------UGCGCGUGCaac -5'
17156 5' -46.8 NC_004333.2 + 47705 0.66 0.991232
Target:  5'- aCGAAGcgUUCAcgcucgccgGCACGuCGCGCGccgUGg -3'
miRNA:   3'- aGCUUUuaGAGU---------UGUGC-GCGUGCa--AC- -5'
17156 5' -46.8 NC_004333.2 + 30970 0.66 0.991098
Target:  5'- gUCGAcGcgCUCGACGCGUucaaccagucgauGCGCGa-- -3'
miRNA:   3'- -AGCUuUuaGAGUUGUGCG-------------CGUGCaac -5'
17156 5' -46.8 NC_004333.2 + 18384 0.66 0.989821
Target:  5'- gUGAGGAUCgu-GCGCaCGCGCGUg- -3'
miRNA:   3'- aGCUUUUAGaguUGUGcGCGUGCAac -5'
17156 5' -46.8 NC_004333.2 + 44909 0.66 0.989821
Target:  5'- aUGAGcugcGUCUCGAUGCGuCGCGCGc-- -3'
miRNA:   3'- aGCUUu---UAGAGUUGUGC-GCGUGCaac -5'
17156 5' -46.8 NC_004333.2 + 17016 0.66 0.988238
Target:  5'- gUCGccGcgCUCGACuCGUGCACGcUGc -3'
miRNA:   3'- -AGCuuUuaGAGUUGuGCGCGUGCaAC- -5'
17156 5' -46.8 NC_004333.2 + 29909 0.66 0.988238
Target:  5'- gCGAAcGAUCagUCGACugGCgGCGCGgcGa -3'
miRNA:   3'- aGCUU-UUAG--AGUUGugCG-CGUGCaaC- -5'
17156 5' -46.8 NC_004333.2 + 41406 0.66 0.986471
Target:  5'- gUGAAcAUCg-AGCACGCGCACa--- -3'
miRNA:   3'- aGCUUuUAGagUUGUGCGCGUGcaac -5'
17156 5' -46.8 NC_004333.2 + 17335 0.66 0.984507
Target:  5'- gUCGAAggcAAUCUgCAGCGCGUccucauGCGCGg-- -3'
miRNA:   3'- -AGCUU---UUAGA-GUUGUGCG------CGUGCaac -5'
17156 5' -46.8 NC_004333.2 + 14313 0.66 0.984507
Target:  5'- cUCGAAAGaggC-GCGCGCGCACGc-- -3'
miRNA:   3'- -AGCUUUUagaGuUGUGCGCGUGCaac -5'
17156 5' -46.8 NC_004333.2 + 20723 0.66 0.984507
Target:  5'- gCGguGAUgaCGGCGCGCGCGCu--- -3'
miRNA:   3'- aGCuuUUAgaGUUGUGCGCGUGcaac -5'
17156 5' -46.8 NC_004333.2 + 2288 0.66 0.984089
Target:  5'- gUCGGcAAGUCguguaccguggcCGGCACGCcCGCGUUGa -3'
miRNA:   3'- -AGCU-UUUAGa-----------GUUGUGCGcGUGCAAC- -5'
17156 5' -46.8 NC_004333.2 + 6285 0.67 0.982333
Target:  5'- uUCGAAGuUUgacgCAACgaGCGCGCugGUg- -3'
miRNA:   3'- -AGCUUUuAGa---GUUG--UGCGCGugCAac -5'
17156 5' -46.8 NC_004333.2 + 44973 0.67 0.982104
Target:  5'- aUCGAGAcgCagcucgaUCAGCugGCGCAgCGa-- -3'
miRNA:   3'- -AGCUUUuaG-------AGUUGugCGCGU-GCaac -5'
17156 5' -46.8 NC_004333.2 + 21801 0.67 0.982104
Target:  5'- gUCGAAcuUCgcugCGucgagcuGCugGCGCACGUg- -3'
miRNA:   3'- -AGCUUuuAGa---GU-------UGugCGCGUGCAac -5'
17156 5' -46.8 NC_004333.2 + 22776 0.67 0.977309
Target:  5'- -aGGAcuGcgUUCGAUGCGcCGCACGUUGc -3'
miRNA:   3'- agCUU--UuaGAGUUGUGC-GCGUGCAAC- -5'
17156 5' -46.8 NC_004333.2 + 19859 0.67 0.974435
Target:  5'- aUCGca---CUCAACGCGCgGCACGa-- -3'
miRNA:   3'- -AGCuuuuaGAGUUGUGCG-CGUGCaac -5'
17156 5' -46.8 NC_004333.2 + 31713 0.67 0.974435
Target:  5'- aUCGAgcAGAUCggcCGACuguucACGCGCGCGg-- -3'
miRNA:   3'- -AGCU--UUUAGa--GUUG-----UGCGCGUGCaac -5'
17156 5' -46.8 NC_004333.2 + 38283 0.67 0.974435
Target:  5'- uUCGAcgAGAUCgauGCACGCGCGacCGUg- -3'
miRNA:   3'- -AGCU--UUUAGaguUGUGCGCGU--GCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.