Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17165 | 3' | -54.1 | NC_004333.2 | + | 31214 | 0.66 | 0.775303 |
Target: 5'- gGCgGGCGGCGAUGcauucgcCGGGcUCGcGCg -3' miRNA: 3'- -UGgCUGCUGCUGCaa-----GCCCaAGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 44577 | 0.7 | 0.582198 |
Target: 5'- gGCCGGCGuCca-GUcCGGGUUCGcUGCg -3' miRNA: 3'- -UGGCUGCuGcugCAaGCCCAAGC-ACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 8700 | 0.71 | 0.517963 |
Target: 5'- cGCCGAgcuCGACGuCGcgcaUCGGcUUCGUGCa -3' miRNA: 3'- -UGGCU---GCUGCuGCa---AGCCcAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 23499 | 0.71 | 0.507514 |
Target: 5'- gACCGAucCGGcCGGCGg-CGGGUaCGUGCc -3' miRNA: 3'- -UGGCU--GCU-GCUGCaaGCCCAaGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 37744 | 0.71 | 0.476732 |
Target: 5'- gGCCGGcCGACGAgCGggUCGGGcgCGcGCu -3' miRNA: 3'- -UGGCU-GCUGCU-GCa-AGCCCaaGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 40779 | 0.72 | 0.437195 |
Target: 5'- cGCCGgugACGaucGCGGCGaUCGGGUUgGUGUu -3' miRNA: 3'- -UGGC---UGC---UGCUGCaAGCCCAAgCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 11222 | 0.73 | 0.399608 |
Target: 5'- cAUCGACuuCGGgGauaaaUUCGGGUUCGUGCu -3' miRNA: 3'- -UGGCUGcuGCUgC-----AAGCCCAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 7760 | 0.77 | 0.226559 |
Target: 5'- cACCGcuACGACGcCGUggUCGGGUUCGccgGCa -3' miRNA: 3'- -UGGC--UGCUGCuGCA--AGCCCAAGCa--CG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 29274 | 0.78 | 0.214966 |
Target: 5'- gGCUGgaACGACGccAUGcgCGGGUUCGUGCa -3' miRNA: 3'- -UGGC--UGCUGC--UGCaaGCCCAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 30749 | 0.69 | 0.625941 |
Target: 5'- cGCCGGCGGCGGCGcgaaCGGcUUCaugaagGUGCu -3' miRNA: 3'- -UGGCUGCUGCUGCaa--GCCcAAG------CACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 9790 | 0.69 | 0.625941 |
Target: 5'- cGCCGACG-CGGCGuUUCGcGaaccgCGUGCg -3' miRNA: 3'- -UGGCUGCuGCUGC-AAGC-Ccaa--GCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 6654 | 0.69 | 0.636914 |
Target: 5'- cGCCGugG-CGGCGaugCGGGcuUUCGcGCg -3' miRNA: 3'- -UGGCugCuGCUGCaa-GCCC--AAGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 24150 | 0.67 | 0.744672 |
Target: 5'- cGCuCGAUGuuCGGCGaUCGGGgcaaGUGCu -3' miRNA: 3'- -UG-GCUGCu-GCUGCaAGCCCaag-CACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 12518 | 0.67 | 0.744672 |
Target: 5'- gGCCGACGACGAUa-UCGacGGU--GUGCu -3' miRNA: 3'- -UGGCUGCUGCUGcaAGC--CCAagCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 7518 | 0.67 | 0.734221 |
Target: 5'- -aUGAC-ACGGCG-UCGGGccgucUCGUGCa -3' miRNA: 3'- ugGCUGcUGCUGCaAGCCCa----AGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 39005 | 0.67 | 0.734221 |
Target: 5'- uGCCGgucGCGuCGugGUUCGuc-UCGUGCu -3' miRNA: 3'- -UGGC---UGCuGCugCAAGCccaAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 22645 | 0.67 | 0.723667 |
Target: 5'- cGCCGAugucgUGACGACGg-CGGGUuucaccgcgcgcUCGUcGCu -3' miRNA: 3'- -UGGCU-----GCUGCUGCaaGCCCA------------AGCA-CG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 29113 | 0.67 | 0.723667 |
Target: 5'- gAUCGugGGCGGCGcggugcUCGcgcuGGUuaUCGUGCu -3' miRNA: 3'- -UGGCugCUGCUGCa-----AGC----CCA--AGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 22367 | 0.68 | 0.702299 |
Target: 5'- uCCGACGAUugGACGUUCGucauGGU-CG-GCg -3' miRNA: 3'- uGGCUGCUG--CUGCAAGC----CCAaGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 38938 | 0.68 | 0.658836 |
Target: 5'- cGCgGACgGGCGGCGUUCGuauggcgcccGGUaCGUGUc -3' miRNA: 3'- -UGgCUG-CUGCUGCAAGC----------CCAaGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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