miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17180 5' -58.4 NC_004333.2 + 4934 0.66 0.511298
Target:  5'- cAUCgCGCCGUacUGCGUCugguuguaccagGGCGcaaUGGCCGAg -3'
miRNA:   3'- -UAG-GCGGUA--GCGUAG------------CCGC---AUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 18781 0.66 0.511298
Target:  5'- -cCCGCCAUCGCugaaccgcgcuuAUCG-CGcGGCCGc -3'
miRNA:   3'- uaGGCGGUAGCG------------UAGCcGCaUCGGCu -5'
17180 5' -58.4 NC_004333.2 + 3915 0.66 0.511298
Target:  5'- --gCGCCAggcgGCAgCGGCGgcaGGCCGAc -3'
miRNA:   3'- uagGCGGUag--CGUaGCCGCa--UCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 28087 0.66 0.511298
Target:  5'- gAUCUGguUCAUCGUGUCGaGCGgcacGCCGAa -3'
miRNA:   3'- -UAGGC--GGUAGCGUAGC-CGCau--CGGCU- -5'
17180 5' -58.4 NC_004333.2 + 1281 0.66 0.493712
Target:  5'- -gCCGCCuggCGCGcguugcguuacgcgaUCGGCGUgaauugcAGCUGAu -3'
miRNA:   3'- uaGGCGGua-GCGU---------------AGCCGCA-------UCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 31392 0.66 0.490637
Target:  5'- -gCCGgCAUUGCGggcgccgugcUCGGCGUcggcgcaggugcGGCCGGu -3'
miRNA:   3'- uaGGCgGUAGCGU----------AGCCGCA------------UCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 2672 0.66 0.489614
Target:  5'- --aCGCCggcagcuugcagcGUCGCGcCGGCGgcGGCCGAc -3'
miRNA:   3'- uagGCGG-------------UAGCGUaGCCGCa-UCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 7866 0.66 0.484514
Target:  5'- cGUCCGCgcucggccuggCGaaguuccugaacggcUCGUAcuuguUCGGCGUGGCCGGc -3'
miRNA:   3'- -UAGGCG-----------GU---------------AGCGU-----AGCCGCAUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 31623 0.66 0.480453
Target:  5'- -gCCGCUGUgGCcgCGcGCGUgaacagucGGCCGAu -3'
miRNA:   3'- uaGGCGGUAgCGuaGC-CGCA--------UCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 18492 0.66 0.480453
Target:  5'- -cCCGCCGUUGC--CGGCac-GCCGAc -3'
miRNA:   3'- uaGGCGGUAGCGuaGCCGcauCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 2280 0.66 0.470373
Target:  5'- cGUuuGCCGUCGgcaaGUCGuguacCGUGGCCGGc -3'
miRNA:   3'- -UAggCGGUAGCg---UAGCc----GCAUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 31775 0.66 0.460401
Target:  5'- uUCCGCagAUCGCGUCGaGCGUcgacGGUCu- -3'
miRNA:   3'- uAGGCGg-UAGCGUAGC-CGCA----UCGGcu -5'
17180 5' -58.4 NC_004333.2 + 42295 0.67 0.450543
Target:  5'- uGUCgGCCGUCGUG-CGGuCGaAGUCGAg -3'
miRNA:   3'- -UAGgCGGUAGCGUaGCC-GCaUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 37644 0.67 0.437903
Target:  5'- -aCCGugacggcugguagaCCAaCGCGUCGGCG-AGCUGAc -3'
miRNA:   3'- uaGGC--------------GGUaGCGUAGCCGCaUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 29414 0.67 0.431181
Target:  5'- cGUUCGCCGUCGC---GGCGcUGGCUGc -3'
miRNA:   3'- -UAGGCGGUAGCGuagCCGC-AUCGGCu -5'
17180 5' -58.4 NC_004333.2 + 11695 0.67 0.421685
Target:  5'- uAUCCGUCGaCGCAgcgccgggCGGCGU-GCUGGc -3'
miRNA:   3'- -UAGGCGGUaGCGUa-------GCCGCAuCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 38373 0.67 0.421685
Target:  5'- --gCGCUGUCGCGUgucgggugcgcCGGCGUGacGCCGGc -3'
miRNA:   3'- uagGCGGUAGCGUA-----------GCCGCAU--CGGCU- -5'
17180 5' -58.4 NC_004333.2 + 2384 0.67 0.421685
Target:  5'- uUCCGCCAguucaaCGCG--GGCGU-GCCGGc -3'
miRNA:   3'- uAGGCGGUa-----GCGUagCCGCAuCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 21032 0.67 0.416048
Target:  5'- --gCGCCGcgCGCGUuugcguccggccccgUGGCGUAGCCGc -3'
miRNA:   3'- uagGCGGUa-GCGUA---------------GCCGCAUCGGCu -5'
17180 5' -58.4 NC_004333.2 + 35906 0.67 0.403076
Target:  5'- -gCCGUUAUaCGCcacAUCGGCGacaGGCCGAa -3'
miRNA:   3'- uaGGCGGUA-GCG---UAGCCGCa--UCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.