Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 44643 | 0.7 | 0.302954 |
Target: 5'- -gCCGaCCAUCGCGUCGGU---GUCGAu -3' miRNA: 3'- uaGGC-GGUAGCGUAGCCGcauCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 42295 | 0.67 | 0.450543 |
Target: 5'- uGUCgGCCGUCGUG-CGGuCGaAGUCGAg -3' miRNA: 3'- -UAGgCGGUAGCGUaGCC-GCaUCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 38373 | 0.67 | 0.421685 |
Target: 5'- --gCGCUGUCGCGUgucgggugcgcCGGCGUGacGCCGGc -3' miRNA: 3'- uagGCGGUAGCGUA-----------GCCGCAU--CGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 38242 | 0.69 | 0.318226 |
Target: 5'- -gCgGCCAUUGCGagCGGCGUgccaagaucggcGGCCGGg -3' miRNA: 3'- uaGgCGGUAGCGUa-GCCGCA------------UCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 37644 | 0.67 | 0.437903 |
Target: 5'- -aCCGugacggcugguagaCCAaCGCGUCGGCG-AGCUGAc -3' miRNA: 3'- uaGGC--------------GGUaGCGUAGCCGCaUCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 35906 | 0.67 | 0.403076 |
Target: 5'- -gCCGUUAUaCGCcacAUCGGCGacaGGCCGAa -3' miRNA: 3'- uaGGCGGUA-GCG---UAGCCGCa--UCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 31775 | 0.66 | 0.460401 |
Target: 5'- uUCCGCagAUCGCGUCGaGCGUcgacGGUCu- -3' miRNA: 3'- uAGGCGg-UAGCGUAGC-CGCA----UCGGcu -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 31623 | 0.66 | 0.480453 |
Target: 5'- -gCCGCUGUgGCcgCGcGCGUgaacagucGGCCGAu -3' miRNA: 3'- uaGGCGGUAgCGuaGC-CGCA--------UCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 31392 | 0.66 | 0.490637 |
Target: 5'- -gCCGgCAUUGCGggcgccgugcUCGGCGUcggcgcaggugcGGCCGGu -3' miRNA: 3'- uaGGCgGUAGCGU----------AGCCGCA------------UCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 29414 | 0.67 | 0.431181 |
Target: 5'- cGUUCGCCGUCGC---GGCGcUGGCUGc -3' miRNA: 3'- -UAGGCGGUAGCGuagCCGC-AUCGGCu -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 29139 | 1.06 | 0.000615 |
Target: 5'- cAUCCGCCAUCGCAUCGGCGUAGCCGAc -3' miRNA: 3'- -UAGGCGGUAGCGUAGCCGCAUCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 28890 | 0.69 | 0.318226 |
Target: 5'- --gCGCgAUCGCGcUCGGCGcaGGCCGGc -3' miRNA: 3'- uagGCGgUAGCGU-AGCCGCa-UCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 28087 | 0.66 | 0.511298 |
Target: 5'- gAUCUGguUCAUCGUGUCGaGCGgcacGCCGAa -3' miRNA: 3'- -UAGGC--GGUAGCGUAGC-CGCau--CGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 23891 | 0.69 | 0.310518 |
Target: 5'- -gCCGCCGUU-CAUCGuGCGgaAGCCGAa -3' miRNA: 3'- uaGGCGGUAGcGUAGC-CGCa-UCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 22508 | 0.68 | 0.358901 |
Target: 5'- -gUCGCCAUCGCGuuccUCGGCGgu-CUGAu -3' miRNA: 3'- uaGGCGGUAGCGU----AGCCGCaucGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 21032 | 0.67 | 0.416048 |
Target: 5'- --gCGCCGcgCGCGUuugcguccggccccgUGGCGUAGCCGc -3' miRNA: 3'- uagGCGGUa-GCGUA---------------GCCGCAUCGGCu -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 20591 | 0.7 | 0.295532 |
Target: 5'- -gCCGCCAgcgaGCGgcgCGGCGgcGGCCGGc -3' miRNA: 3'- uaGGCGGUag--CGUa--GCCGCa-UCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 18781 | 0.66 | 0.511298 |
Target: 5'- -cCCGCCAUCGCugaaccgcgcuuAUCG-CGcGGCCGc -3' miRNA: 3'- uaGGCGGUAGCG------------UAGCcGCaUCGGCu -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 18576 | 0.68 | 0.36746 |
Target: 5'- -gCCGCUgcagcGUC-CGUCGGCGU-GCCGGc -3' miRNA: 3'- uaGGCGG-----UAGcGUAGCCGCAuCGGCU- -5' |
|||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 18492 | 0.66 | 0.480453 |
Target: 5'- -cCCGCCGUUGC--CGGCac-GCCGAc -3' miRNA: 3'- uaGGCGGUAGCGuaGCCGcauCGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home