Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 31392 | 0.66 | 0.490637 |
Target: 5'- -gCCGgCAUUGCGggcgccgugcUCGGCGUcggcgcaggugcGGCCGGu -3' miRNA: 3'- uaGGCgGUAGCGU----------AGCCGCA------------UCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 14293 | 0.73 | 0.180383 |
Target: 5'- --aCGCCGUCGCAUgGGUcUGGUCGAa -3' miRNA: 3'- uagGCGGUAGCGUAgCCGcAUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 20591 | 0.7 | 0.295532 |
Target: 5'- -gCCGCCAgcgaGCGgcgCGGCGgcGGCCGGc -3' miRNA: 3'- uaGGCGGUag--CGUa--GCCGCa-UCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 44643 | 0.7 | 0.302954 |
Target: 5'- -gCCGaCCAUCGCGUCGGU---GUCGAu -3' miRNA: 3'- uaGGC-GGUAGCGUAGCCGcauCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 38242 | 0.69 | 0.318226 |
Target: 5'- -gCgGCCAUUGCGagCGGCGUgccaagaucggcGGCCGGg -3' miRNA: 3'- uaGgCGGUAGCGUa-GCCGCA------------UCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 12752 | 0.69 | 0.318226 |
Target: 5'- gAUCCaGUUGUCGCuguUCGGCGcGGUCGAc -3' miRNA: 3'- -UAGG-CGGUAGCGu--AGCCGCaUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 22508 | 0.68 | 0.358901 |
Target: 5'- -gUCGCCAUCGCGuuccUCGGCGgu-CUGAu -3' miRNA: 3'- uaGGCGGUAGCGU----AGCCGCaucGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 18576 | 0.68 | 0.36746 |
Target: 5'- -gCCGCUgcagcGUC-CGUCGGCGU-GCCGGc -3' miRNA: 3'- uaGGCGG-----UAGcGUAGCCGCAuCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 7347 | 0.68 | 0.376159 |
Target: 5'- cGUUCGCCGUCGCGcagagaUCGGCGUcuaaucgucaGGCg-- -3' miRNA: 3'- -UAGGCGGUAGCGU------AGCCGCA----------UCGgcu -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 8113 | 0.68 | 0.384996 |
Target: 5'- -gCCGCCGagCuCGUCGGCG-AGUCGAa -3' miRNA: 3'- uaGGCGGUa-GcGUAGCCGCaUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 7866 | 0.66 | 0.484514 |
Target: 5'- cGUCCGCgcucggccuggCGaaguuccugaacggcUCGUAcuuguUCGGCGUGGCCGGc -3' miRNA: 3'- -UAGGCG-----------GU---------------AGCGU-----AGCCGCAUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 31775 | 0.66 | 0.460401 |
Target: 5'- uUCCGCagAUCGCGUCGaGCGUcgacGGUCu- -3' miRNA: 3'- uAGGCGg-UAGCGUAGC-CGCA----UCGGcu -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 42295 | 0.67 | 0.450543 |
Target: 5'- uGUCgGCCGUCGUG-CGGuCGaAGUCGAg -3' miRNA: 3'- -UAGgCGGUAGCGUaGCC-GCaUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 37644 | 0.67 | 0.437903 |
Target: 5'- -aCCGugacggcugguagaCCAaCGCGUCGGCG-AGCUGAc -3' miRNA: 3'- uaGGC--------------GGUaGCGUAGCCGCaUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 2384 | 0.67 | 0.421685 |
Target: 5'- uUCCGCCAguucaaCGCG--GGCGU-GCCGGc -3' miRNA: 3'- uAGGCGGUa-----GCGUagCCGCAuCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 21032 | 0.67 | 0.416048 |
Target: 5'- --gCGCCGcgCGCGUuugcguccggccccgUGGCGUAGCCGc -3' miRNA: 3'- uagGCGGUa-GCGUA---------------GCCGCAUCGGCu -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 4934 | 0.66 | 0.511298 |
Target: 5'- cAUCgCGCCGUacUGCGUCugguuguaccagGGCGcaaUGGCCGAg -3' miRNA: 3'- -UAG-GCGGUA--GCGUAG------------CCGC---AUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 6685 | 0.71 | 0.243722 |
Target: 5'- cAUCCGCCGcuucacgugcggggCGCAUUGGCGacgAGCCa- -3' miRNA: 3'- -UAGGCGGUa-------------GCGUAGCCGCa--UCGGcu -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 18419 | 0.71 | 0.253964 |
Target: 5'- --aCGCC-UCGCgAUCGGCGgcGUCGAc -3' miRNA: 3'- uagGCGGuAGCG-UAGCCGCauCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 5416 | 0.7 | 0.288252 |
Target: 5'- uUCUGCCAUCGCggCaGCGUcGUCGGc -3' miRNA: 3'- uAGGCGGUAGCGuaGcCGCAuCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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