miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17194 3' -54.1 NC_004333.2 + 12753 0.69 0.591199
Target:  5'- cGCGCGcaCGUaGUCG--UACCAGACGCg -3'
miRNA:   3'- -CGCGCa-GCGcUAGCucAUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 35690 0.69 0.602262
Target:  5'- aCGCccuucaGUCGCGAacgCGAGUGucggcUCAGGCACa -3'
miRNA:   3'- cGCG------CAGCGCUa--GCUCAU-----GGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 11227 0.68 0.622235
Target:  5'- gGCGCGgcuccuugccgGCGcUCGAGUgcuGCCAGACGg -3'
miRNA:   3'- -CGCGCag---------CGCuAGCUCA---UGGUCUGUg -5'
17194 3' -54.1 NC_004333.2 + 43725 0.68 0.623347
Target:  5'- aGCuuGUUGCGAUCcuGGUggugcagGCCGGACGCa -3'
miRNA:   3'- -CGcgCAGCGCUAGc-UCA-------UGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 28889 0.68 0.624458
Target:  5'- cGCGCGaUCGCGcUCGGcgcagGCCGG-CGCa -3'
miRNA:   3'- -CGCGC-AGCGCuAGCUca---UGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 37252 0.68 0.635571
Target:  5'- cGCGCGUCGUGAgcggCGuGUcGCC--GCGCu -3'
miRNA:   3'- -CGCGCAGCGCUa---GCuCA-UGGucUGUG- -5'
17194 3' -54.1 NC_004333.2 + 20975 0.68 0.640016
Target:  5'- cGCGCGgCGCGggCGAGUgggugcguuucgagcGCguGGCAg -3'
miRNA:   3'- -CGCGCaGCGCuaGCUCA---------------UGguCUGUg -5'
17194 3' -54.1 NC_004333.2 + 1895 0.68 0.657777
Target:  5'- gGCgGgGUCGcCGAUCaggaAGUACCAGcCACg -3'
miRNA:   3'- -CG-CgCAGC-GCUAGc---UCAUGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 37928 0.68 0.657777
Target:  5'- -gGCcUCGgGcUCGAGU-CCGGACGCg -3'
miRNA:   3'- cgCGcAGCgCuAGCUCAuGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 30170 0.68 0.668848
Target:  5'- cGCGgGUCGCGcAUCGAcgcGUuCCGucGGCGCu -3'
miRNA:   3'- -CGCgCAGCGC-UAGCU---CAuGGU--CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 39172 0.68 0.668848
Target:  5'- -aGCGUCGUuGUauuccuucaCGAGUGCC-GACGCa -3'
miRNA:   3'- cgCGCAGCGcUA---------GCUCAUGGuCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 6656 0.67 0.679885
Target:  5'- aGCGCGcucggCGCGcUCGAG---CAGGCGCg -3'
miRNA:   3'- -CGCGCa----GCGCuAGCUCaugGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 25272 0.67 0.690876
Target:  5'- gGCGUcgacgucgaGUCGCGcagCGAGUuCgAGACGCg -3'
miRNA:   3'- -CGCG---------CAGCGCua-GCUCAuGgUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 28041 0.67 0.690876
Target:  5'- uCGUGUCGCucguGAUCGGcGUaagcacguccuGCCAGAUGCg -3'
miRNA:   3'- cGCGCAGCG----CUAGCU-CA-----------UGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 16850 0.67 0.701809
Target:  5'- aGCGCGUCGCGGccaaggcgaUCGAcGggcgACUguucGGCACg -3'
miRNA:   3'- -CGCGCAGCGCU---------AGCU-Ca---UGGu---CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 37083 0.67 0.701809
Target:  5'- uGCGCGgauUCGCGcuAUCGAGgacgUCGGGCAg -3'
miRNA:   3'- -CGCGC---AGCGC--UAGCUCau--GGUCUGUg -5'
17194 3' -54.1 NC_004333.2 + 38591 0.67 0.712672
Target:  5'- aCGCGUCGCacaGAUCGAcaaagaacGUGuCgAGGCGCu -3'
miRNA:   3'- cGCGCAGCG---CUAGCU--------CAU-GgUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 29892 0.67 0.712672
Target:  5'- aGCGCuG-CGCGAUCGG--GCCGcGCGCg -3'
miRNA:   3'- -CGCG-CaGCGCUAGCUcaUGGUcUGUG- -5'
17194 3' -54.1 NC_004333.2 + 11829 0.66 0.743678
Target:  5'- cGCGCacucaaggugaacGUCGgugcCGGUCGGcUGCCGGACAUc -3'
miRNA:   3'- -CGCG-------------CAGC----GCUAGCUcAUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 23890 0.66 0.744731
Target:  5'- cGCGUGagGCGAUCGAcaugACC--GCACa -3'
miRNA:   3'- -CGCGCagCGCUAGCUca--UGGucUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.