Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17199 | 5' | -57.1 | NC_004333.2 | + | 39223 | 1.09 | 0.000527 |
Target: 5'- gUCGGCCGAGCUGCGUGCAAUGCUCGAc -3' miRNA: 3'- -AGCCGGCUCGACGCACGUUACGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 12044 | 0.8 | 0.068054 |
Target: 5'- aCGGCCGcgaucgucgacGCUGCGUGCAAggcGCUCGAc -3' miRNA: 3'- aGCCGGCu----------CGACGCACGUUa--CGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 25516 | 0.76 | 0.138733 |
Target: 5'- gCGGCCGAGC-GCGUcuugguacGCGccGCUCGAg -3' miRNA: 3'- aGCCGGCUCGaCGCA--------CGUuaCGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 30640 | 0.76 | 0.142647 |
Target: 5'- gCGGCaaGGCgcgGCGUGCGcUGCUCGAg -3' miRNA: 3'- aGCCGgcUCGa--CGCACGUuACGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 6711 | 0.74 | 0.177751 |
Target: 5'- aUUGGCgaCGAGCcaUGCGUGCAacGUGCUCa- -3' miRNA: 3'- -AGCCG--GCUCG--ACGCACGU--UACGAGcu -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 47317 | 0.74 | 0.187656 |
Target: 5'- gCGGCUGA-CUGUGcUGCGAUGCUCa- -3' miRNA: 3'- aGCCGGCUcGACGC-ACGUUACGAGcu -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 38064 | 0.74 | 0.198042 |
Target: 5'- --aGCCGAGCgacGCGgGCAGUGCUUGGa -3' miRNA: 3'- agcCGGCUCGa--CGCaCGUUACGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 22184 | 0.73 | 0.231638 |
Target: 5'- gCGGCCGgcggcgguucggcGGCUGCG-GCc-UGCUCGAu -3' miRNA: 3'- aGCCGGC-------------UCGACGCaCGuuACGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 3626 | 0.73 | 0.232247 |
Target: 5'- gUCGGCCGAcgcGCUGCGcgGCAccGCgUUGAu -3' miRNA: 3'- -AGCCGGCU---CGACGCa-CGUuaCG-AGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 37108 | 0.72 | 0.251145 |
Target: 5'- gUCGGgC-AGCUGCGggGCG-UGCUCGAa -3' miRNA: 3'- -AGCCgGcUCGACGCa-CGUuACGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 32321 | 0.72 | 0.264436 |
Target: 5'- gUCGGUcaCGAGC-GCGUGCAcgGCUgcCGGg -3' miRNA: 3'- -AGCCG--GCUCGaCGCACGUuaCGA--GCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 44416 | 0.72 | 0.264436 |
Target: 5'- cCuGCCGGGCucgcuggcuggUGCGUGCGAggcGCUCGGc -3' miRNA: 3'- aGcCGGCUCG-----------ACGCACGUUa--CGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 41649 | 0.71 | 0.297905 |
Target: 5'- -gGGCgCGGGCUGCGgccguacgccgGCAaggagaauauccucGUGCUCGAc -3' miRNA: 3'- agCCG-GCUCGACGCa----------CGU--------------UACGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 13897 | 0.7 | 0.315445 |
Target: 5'- cCGGCaCGGGCUGCGcgGCGGcUGCcguggCGAu -3' miRNA: 3'- aGCCG-GCUCGACGCa-CGUU-ACGa----GCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 2182 | 0.7 | 0.331322 |
Target: 5'- aCGcGCCGAGUU-CGagGCGAUGCUCGc -3' miRNA: 3'- aGC-CGGCUCGAcGCa-CGUUACGAGCu -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 9217 | 0.7 | 0.331322 |
Target: 5'- gCGGUCGAGCagGCaaagcgcgacGUGCGuuacGUGCUCGGc -3' miRNA: 3'- aGCCGGCUCGa-CG----------CACGU----UACGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 46107 | 0.7 | 0.339479 |
Target: 5'- cUUGGCCGAGCgcggUGCGcgcuacgGCAA-GUUCGAg -3' miRNA: 3'- -AGCCGGCUCG----ACGCa------CGUUaCGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 31395 | 0.7 | 0.347779 |
Target: 5'- cUGGCCG-GCauUGCGgGCGccGUGCUCGGc -3' miRNA: 3'- aGCCGGCuCG--ACGCaCGU--UACGAGCU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 15152 | 0.7 | 0.356224 |
Target: 5'- gUCGGuuGAGUUGCGgcgagcgagcgGCAGUGCguaGGu -3' miRNA: 3'- -AGCCggCUCGACGCa----------CGUUACGag-CU- -5' |
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17199 | 5' | -57.1 | NC_004333.2 | + | 37687 | 0.7 | 0.356224 |
Target: 5'- gUCGGCCGgcccGGC-GCGUgGCGGcucaauggccUGCUCGAu -3' miRNA: 3'- -AGCCGGC----UCGaCGCA-CGUU----------ACGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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