miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17199 5' -57.1 NC_004333.2 + 30640 0.76 0.142647
Target:  5'- gCGGCaaGGCgcgGCGUGCGcUGCUCGAg -3'
miRNA:   3'- aGCCGgcUCGa--CGCACGUuACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 41308 0.69 0.409853
Target:  5'- -aGGCCGAGCUcgcccgGCGcGCGAUGgaCGu -3'
miRNA:   3'- agCCGGCUCGA------CGCaCGUUACgaGCu -5'
17199 5' -57.1 NC_004333.2 + 18809 0.67 0.509421
Target:  5'- gCGGCCGcagGGC-GCGUGC--UGCuaUCGAa -3'
miRNA:   3'- aGCCGGC---UCGaCGCACGuuACG--AGCU- -5'
17199 5' -57.1 NC_004333.2 + 33282 0.66 0.58473
Target:  5'- uUCaGCCGAGC-GCGcGCGuUGCgUCGGc -3'
miRNA:   3'- -AGcCGGCUCGaCGCaCGUuACG-AGCU- -5'
17199 5' -57.1 NC_004333.2 + 44416 0.72 0.264436
Target:  5'- cCuGCCGGGCucgcuggcuggUGCGUGCGAggcGCUCGGc -3'
miRNA:   3'- aGcCGGCUCG-----------ACGCACGUUa--CGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 32321 0.72 0.264436
Target:  5'- gUCGGUcaCGAGC-GCGUGCAcgGCUgcCGGg -3'
miRNA:   3'- -AGCCG--GCUCGaCGCACGUuaCGA--GCU- -5'
17199 5' -57.1 NC_004333.2 + 13897 0.7 0.315445
Target:  5'- cCGGCaCGGGCUGCGcgGCGGcUGCcguggCGAu -3'
miRNA:   3'- aGCCG-GCUCGACGCa-CGUU-ACGa----GCU- -5'
17199 5' -57.1 NC_004333.2 + 46107 0.7 0.339479
Target:  5'- cUUGGCCGAGCgcggUGCGcgcuacgGCAA-GUUCGAg -3'
miRNA:   3'- -AGCCGGCUCG----ACGCa------CGUUaCGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 39223 1.09 0.000527
Target:  5'- gUCGGCCGAGCUGCGUGCAAUGCUCGAc -3'
miRNA:   3'- -AGCCGGCUCGACGCACGUUACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 4971 0.69 0.391423
Target:  5'- aUGGCCGAGCcuUGCG-GCAG-GCauauUCGAa -3'
miRNA:   3'- aGCCGGCUCG--ACGCaCGUUaCG----AGCU- -5'
17199 5' -57.1 NC_004333.2 + 10213 0.69 0.373543
Target:  5'- gCGGCCGucggcaucaaAGCUGCGcGCGGucUGCUUGu -3'
miRNA:   3'- aGCCGGC----------UCGACGCaCGUU--ACGAGCu -5'
17199 5' -57.1 NC_004333.2 + 37687 0.7 0.356224
Target:  5'- gUCGGCCGgcccGGC-GCGUgGCGGcucaauggccUGCUCGAu -3'
miRNA:   3'- -AGCCGGC----UCGaCGCA-CGUU----------ACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 6711 0.74 0.177751
Target:  5'- aUUGGCgaCGAGCcaUGCGUGCAacGUGCUCa- -3'
miRNA:   3'- -AGCCG--GCUCG--ACGCACGU--UACGAGcu -5'
17199 5' -57.1 NC_004333.2 + 13120 0.69 0.382413
Target:  5'- aCGGCaucgCGAGCUGCGUcauGCuGAUGCcggCGAa -3'
miRNA:   3'- aGCCG----GCUCGACGCA---CG-UUACGa--GCU- -5'
17199 5' -57.1 NC_004333.2 + 22184 0.73 0.231638
Target:  5'- gCGGCCGgcggcgguucggcGGCUGCG-GCc-UGCUCGAu -3'
miRNA:   3'- aGCCGGC-------------UCGACGCaCGuuACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 15152 0.7 0.356224
Target:  5'- gUCGGuuGAGUUGCGgcgagcgagcgGCAGUGCguaGGu -3'
miRNA:   3'- -AGCCggCUCGACGCa----------CGUUACGag-CU- -5'
17199 5' -57.1 NC_004333.2 + 14688 0.69 0.382413
Target:  5'- gUCGGCCGAGUgcagGUGUgGCAcgaGUGCgccaagCGGc -3'
miRNA:   3'- -AGCCGGCUCGa---CGCA-CGU---UACGa-----GCU- -5'
17199 5' -57.1 NC_004333.2 + 42029 0.68 0.458196
Target:  5'- gCGGCCaacGAGCgggGCGUGCuc-GC-CGAa -3'
miRNA:   3'- aGCCGG---CUCGa--CGCACGuuaCGaGCU- -5'
17199 5' -57.1 NC_004333.2 + 37108 0.72 0.251145
Target:  5'- gUCGGgC-AGCUGCGggGCG-UGCUCGAa -3'
miRNA:   3'- -AGCCgGcUCGACGCa-CGUuACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 41649 0.71 0.297905
Target:  5'- -gGGCgCGGGCUGCGgccguacgccgGCAaggagaauauccucGUGCUCGAc -3'
miRNA:   3'- agCCG-GCUCGACGCa----------CGU--------------UACGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.