miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17199 5' -57.1 NC_004333.2 + 2182 0.7 0.331322
Target:  5'- aCGcGCCGAGUU-CGagGCGAUGCUCGc -3'
miRNA:   3'- aGC-CGGCUCGAcGCa-CGUUACGAGCu -5'
17199 5' -57.1 NC_004333.2 + 3626 0.73 0.232247
Target:  5'- gUCGGCCGAcgcGCUGCGcgGCAccGCgUUGAu -3'
miRNA:   3'- -AGCCGGCU---CGACGCa-CGUuaCG-AGCU- -5'
17199 5' -57.1 NC_004333.2 + 4971 0.69 0.391423
Target:  5'- aUGGCCGAGCcuUGCG-GCAG-GCauauUCGAa -3'
miRNA:   3'- aGCCGGCUCG--ACGCaCGUUaCG----AGCU- -5'
17199 5' -57.1 NC_004333.2 + 6711 0.74 0.177751
Target:  5'- aUUGGCgaCGAGCcaUGCGUGCAacGUGCUCa- -3'
miRNA:   3'- -AGCCG--GCUCG--ACGCACGU--UACGAGcu -5'
17199 5' -57.1 NC_004333.2 + 9217 0.7 0.331322
Target:  5'- gCGGUCGAGCagGCaaagcgcgacGUGCGuuacGUGCUCGGc -3'
miRNA:   3'- aGCCGGCUCGa-CG----------CACGU----UACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 10009 0.66 0.552059
Target:  5'- gUCGGCCGu-CUGCGcGacGUGCUUGAu -3'
miRNA:   3'- -AGCCGGCucGACGCaCguUACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 10213 0.69 0.373543
Target:  5'- gCGGCCGucggcaucaaAGCUGCGcGCGGucUGCUUGu -3'
miRNA:   3'- aGCCGGC----------UCGACGCaCGUU--ACGAGCu -5'
17199 5' -57.1 NC_004333.2 + 12044 0.8 0.068054
Target:  5'- aCGGCCGcgaucgucgacGCUGCGUGCAAggcGCUCGAc -3'
miRNA:   3'- aGCCGGCu----------CGACGCACGUUa--CGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 12193 0.66 0.541286
Target:  5'- aCGG-CGAGCU-CGUGCc--GCUCGGu -3'
miRNA:   3'- aGCCgGCUCGAcGCACGuuaCGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 13120 0.69 0.382413
Target:  5'- aCGGCaucgCGAGCUGCGUcauGCuGAUGCcggCGAa -3'
miRNA:   3'- aGCCG----GCUCGACGCA---CG-UUACGa--GCU- -5'
17199 5' -57.1 NC_004333.2 + 13897 0.7 0.315445
Target:  5'- cCGGCaCGGGCUGCGcgGCGGcUGCcguggCGAu -3'
miRNA:   3'- aGCCG-GCUCGACGCa-CGUU-ACGa----GCU- -5'
17199 5' -57.1 NC_004333.2 + 14260 0.66 0.58473
Target:  5'- uUCGaGCCGAGCgGCG-GCAc-GCcuUCGAg -3'
miRNA:   3'- -AGC-CGGCUCGaCGCaCGUuaCG--AGCU- -5'
17199 5' -57.1 NC_004333.2 + 14688 0.69 0.382413
Target:  5'- gUCGGCCGAGUgcagGUGUgGCAcgaGUGCgccaagCGGc -3'
miRNA:   3'- -AGCCGGCUCGa---CGCA-CGU---UACGa-----GCU- -5'
17199 5' -57.1 NC_004333.2 + 14744 0.66 0.569425
Target:  5'- cUCGGCCGAcaaGCUGCGcGaAAUGCgccgcaacaucagCGAa -3'
miRNA:   3'- -AGCCGGCU---CGACGCaCgUUACGa------------GCU- -5'
17199 5' -57.1 NC_004333.2 + 15152 0.7 0.356224
Target:  5'- gUCGGuuGAGUUGCGgcgagcgagcgGCAGUGCguaGGu -3'
miRNA:   3'- -AGCCggCUCGACGCa----------CGUUACGag-CU- -5'
17199 5' -57.1 NC_004333.2 + 16586 0.66 0.541286
Target:  5'- gCGGcCCGAGaaagagaGUGUGgAAUGUUCGAc -3'
miRNA:   3'- aGCC-GGCUCga-----CGCACgUUACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 17473 0.66 0.530584
Target:  5'- gUCGuGaCCGcGCUGCGcgagcagcucgaUGCGcUGCUCGAc -3'
miRNA:   3'- -AGC-C-GGCuCGACGC------------ACGUuACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 18809 0.67 0.509421
Target:  5'- gCGGCCGcagGGC-GCGUGC--UGCuaUCGAa -3'
miRNA:   3'- aGCCGGC---UCGaCGCACGuuACG--AGCU- -5'
17199 5' -57.1 NC_004333.2 + 22184 0.73 0.231638
Target:  5'- gCGGCCGgcggcgguucggcGGCUGCG-GCc-UGCUCGAu -3'
miRNA:   3'- aGCCGGC-------------UCGACGCaCGuuACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 25516 0.76 0.138733
Target:  5'- gCGGCCGAGC-GCGUcuugguacGCGccGCUCGAg -3'
miRNA:   3'- aGCCGGCUCGaCGCA--------CGUuaCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.