miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17200 3' -49.2 NC_004333.2 + 36364 0.7 0.780166
Target:  5'- uCGGGCGgCgcguaucgcauggCGCAGGACGUCGcguGUCg -3'
miRNA:   3'- -GCCUGCgGa------------GCGUUCUGUAGUuu-UAG- -5'
17200 3' -49.2 NC_004333.2 + 9052 0.67 0.927594
Target:  5'- uCGGuCGCCgccgCGCAcGGCcgCAcGAUCc -3'
miRNA:   3'- -GCCuGCGGa---GCGUuCUGuaGUuUUAG- -5'
17200 3' -49.2 NC_004333.2 + 8710 0.68 0.886046
Target:  5'- cCGGGCGCCgcgccgaGCucGACGUCGcgcAUCg -3'
miRNA:   3'- -GCCUGCGGag-----CGuuCUGUAGUuu-UAG- -5'
17200 3' -49.2 NC_004333.2 + 45188 0.68 0.886046
Target:  5'- gCGcGAuCGCCgCGCAgacAGGCGUCGAGuAUCg -3'
miRNA:   3'- -GC-CU-GCGGaGCGU---UCUGUAGUUU-UAG- -5'
17200 3' -49.2 NC_004333.2 + 30457 0.68 0.869831
Target:  5'- cCGGuCGCUUCGaCGuucGGCAUCGcgGUCg -3'
miRNA:   3'- -GCCuGCGGAGC-GUu--CUGUAGUuuUAG- -5'
17200 3' -49.2 NC_004333.2 + 21185 0.68 0.869831
Target:  5'- aGGGCG-CUCGCGA-ACAUCAGAc-- -3'
miRNA:   3'- gCCUGCgGAGCGUUcUGUAGUUUuag -5'
17200 3' -49.2 NC_004333.2 + 31383 0.69 0.814876
Target:  5'- gCGGGCGCCgUGCucGGCGUCGGc--- -3'
miRNA:   3'- -GCCUGCGGaGCGuuCUGUAGUUuuag -5'
17200 3' -49.2 NC_004333.2 + 7680 0.7 0.804903
Target:  5'- -aGACGCaaUCGCAGGGCAUCA---UCa -3'
miRNA:   3'- gcCUGCGg-AGCGUUCUGUAGUuuuAG- -5'
17200 3' -49.2 NC_004333.2 + 7152 0.7 0.794727
Target:  5'- uGuACGCaacugCGCGAGACGUCAAcAUCa -3'
miRNA:   3'- gCcUGCGga---GCGUUCUGUAGUUuUAG- -5'
17200 3' -49.2 NC_004333.2 + 37693 0.67 0.927594
Target:  5'- gGGAUGUCgCGCGuGACAUCAu---- -3'
miRNA:   3'- gCCUGCGGaGCGUuCUGUAGUuuuag -5'
17200 3' -49.2 NC_004333.2 + 40114 0.67 0.927594
Target:  5'- -uGAUGUCUUGCGAGGCGUCc----- -3'
miRNA:   3'- gcCUGCGGAGCGUUCUGUAGuuuuag -5'
17200 3' -49.2 NC_004333.2 + 26806 0.66 0.933447
Target:  5'- gGGGCGCCgaCGCAAuGgGUCAAGuUCc -3'
miRNA:   3'- gCCUGCGGa-GCGUUcUgUAGUUUuAG- -5'
17200 3' -49.2 NC_004333.2 + 31850 0.66 0.953807
Target:  5'- uCGGGCGCaugUCGCAcGACAcgCGAGcgUa -3'
miRNA:   3'- -GCCUGCGg--AGCGUuCUGUa-GUUUuaG- -5'
17200 3' -49.2 NC_004333.2 + 41378 0.66 0.953807
Target:  5'- uCGcGCGCCggGCGAGcucggccuCGUCGAAGUCg -3'
miRNA:   3'- -GCcUGCGGagCGUUCu-------GUAGUUUUAG- -5'
17200 3' -49.2 NC_004333.2 + 30959 0.66 0.952447
Target:  5'- -cGACGCgUucaaccagucgaugCGCGAGACGUCGGAGg- -3'
miRNA:   3'- gcCUGCGgA--------------GCGUUCUGUAGUUUUag -5'
17200 3' -49.2 NC_004333.2 + 45361 0.66 0.949169
Target:  5'- uCGaACGCCUCGagcuuCGGGACGUCGu--UCg -3'
miRNA:   3'- -GCcUGCGGAGC-----GUUCUGUAGUuuuAG- -5'
17200 3' -49.2 NC_004333.2 + 44228 0.66 0.944233
Target:  5'- aGGcGCGCgUCGUcGGAuCGUCGAGAUa -3'
miRNA:   3'- gCC-UGCGgAGCGuUCU-GUAGUUUUAg -5'
17200 3' -49.2 NC_004333.2 + 9495 0.66 0.938993
Target:  5'- cCGGACggcgugcgcaGCC-CGCAGGGCAgCGAAGa- -3'
miRNA:   3'- -GCCUG----------CGGaGCGUUCUGUaGUUUUag -5'
17200 3' -49.2 NC_004333.2 + 18488 0.66 0.938993
Target:  5'- -cGACGCCgccgaUCGCGAGGCGUUg----- -3'
miRNA:   3'- gcCUGCGG-----AGCGUUCUGUAGuuuuag -5'
17200 3' -49.2 NC_004333.2 + 28315 0.66 0.938993
Target:  5'- aGGAgCGCCgCGCGc-GCGUCAcgGUCa -3'
miRNA:   3'- gCCU-GCGGaGCGUucUGUAGUuuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.