miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17204 5' -54 NC_004333.2 + 23916 0.71 0.446236
Target:  5'- aACGGCGCGUacgUCAGCGUcuuguagacguaguGCgGUUCGUg -3'
miRNA:   3'- -UGCUGCGCGa--AGUUGCG--------------CGgUAAGCA- -5'
17204 5' -54 NC_004333.2 + 15469 0.71 0.449235
Target:  5'- uCGGCGCGCUU-GGCGUGCCGagCGc -3'
miRNA:   3'- uGCUGCGCGAAgUUGCGCGGUaaGCa -5'
17204 5' -54 NC_004333.2 + 43524 0.71 0.449235
Target:  5'- uGCGGCGCGCa--AGCGCGCgAUgcgcgCGUc -3'
miRNA:   3'- -UGCUGCGCGaagUUGCGCGgUAa----GCA- -5'
17204 5' -54 NC_004333.2 + 20640 0.71 0.459313
Target:  5'- cACGGCGCGaccCGACGCGCCGa---- -3'
miRNA:   3'- -UGCUGCGCgaaGUUGCGCGGUaagca -5'
17204 5' -54 NC_004333.2 + 9540 0.71 0.46951
Target:  5'- uCGACGagcuGCUUCAAUgcgGCGCCGaUCGUg -3'
miRNA:   3'- uGCUGCg---CGAAGUUG---CGCGGUaAGCA- -5'
17204 5' -54 NC_004333.2 + 44283 0.7 0.479821
Target:  5'- uUGuuGCGCa-CAAUGCGCCGUUCGa -3'
miRNA:   3'- uGCugCGCGaaGUUGCGCGGUAAGCa -5'
17204 5' -54 NC_004333.2 + 9740 0.7 0.490241
Target:  5'- gGCGACaugaGCGCcggauGCGCGCCcgUCGUc -3'
miRNA:   3'- -UGCUG----CGCGaagu-UGCGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 39 0.7 0.490241
Target:  5'- cUGACGCgGCaagUCuAGCGCGCC-UUCGUa -3'
miRNA:   3'- uGCUGCG-CGa--AG-UUGCGCGGuAAGCA- -5'
17204 5' -54 NC_004333.2 + 28185 0.7 0.500766
Target:  5'- aACG-CGCGCguugagauuUUCGGCGUGCCGcUCGa -3'
miRNA:   3'- -UGCuGCGCG---------AAGUUGCGCGGUaAGCa -5'
17204 5' -54 NC_004333.2 + 45032 0.7 0.500766
Target:  5'- cGCGugGCGCUggCGGCGCGCaaa-CGc -3'
miRNA:   3'- -UGCugCGCGAa-GUUGCGCGguaaGCa -5'
17204 5' -54 NC_004333.2 + 18178 0.7 0.500766
Target:  5'- cCGGCGUGCcgggUGAUGCGCUcgUCGUg -3'
miRNA:   3'- uGCUGCGCGaa--GUUGCGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 9639 0.7 0.511389
Target:  5'- gGCGGCGCGCcu--GCGCccgGCUGUUCGUu -3'
miRNA:   3'- -UGCUGCGCGaaguUGCG---CGGUAAGCA- -5'
17204 5' -54 NC_004333.2 + 23233 0.7 0.511389
Target:  5'- cACGGCG-GCg--AACGCGCCggUCGUg -3'
miRNA:   3'- -UGCUGCgCGaagUUGCGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 1261 0.7 0.532905
Target:  5'- cAUGACGUGCUccUUGGCGCGCCGc---- -3'
miRNA:   3'- -UGCUGCGCGA--AGUUGCGCGGUaagca -5'
17204 5' -54 NC_004333.2 + 20006 0.7 0.532905
Target:  5'- gGCGGCuCGCcgccCGGCGCGCUcgUCGUc -3'
miRNA:   3'- -UGCUGcGCGaa--GUUGCGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 28834 0.7 0.532905
Target:  5'- cGCGAccCGCGCggUCGACGCGgCGcUCGc -3'
miRNA:   3'- -UGCU--GCGCGa-AGUUGCGCgGUaAGCa -5'
17204 5' -54 NC_004333.2 + 38535 0.69 0.543786
Target:  5'- uGCGACGCGUUgccgucCGACGCGCUca-CGg -3'
miRNA:   3'- -UGCUGCGCGAa-----GUUGCGCGGuaaGCa -5'
17204 5' -54 NC_004333.2 + 8990 0.69 0.543786
Target:  5'- cGCGGCG-GCgacCGACGCGgCGUUCGc -3'
miRNA:   3'- -UGCUGCgCGaa-GUUGCGCgGUAAGCa -5'
17204 5' -54 NC_004333.2 + 25117 0.69 0.543786
Target:  5'- cACGGCGaGCacggCGGCGCGCaCGUUCGc -3'
miRNA:   3'- -UGCUGCgCGaa--GUUGCGCG-GUAAGCa -5'
17204 5' -54 NC_004333.2 + 11902 0.69 0.554737
Target:  5'- cCGGCGCaaGCUggAGCGCGCCG-UCGc -3'
miRNA:   3'- uGCUGCG--CGAagUUGCGCGGUaAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.