miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17204 5' -54 NC_004333.2 + 41555 0.9 0.02398
Target:  5'- cGCGAUGCucacgaccgGCUUCAACGCGCCAUUCGUu -3'
miRNA:   3'- -UGCUGCG---------CGAAGUUGCGCGGUAAGCA- -5'
17204 5' -54 NC_004333.2 + 37877 0.85 0.053791
Target:  5'- cGCGACGCGCUUCGcauCGCGCCGcUUCGc -3'
miRNA:   3'- -UGCUGCGCGAAGUu--GCGCGGU-AAGCa -5'
17204 5' -54 NC_004333.2 + 23611 0.79 0.144372
Target:  5'- aGCGAUGCGCgcgaccuggUUCAACGCGCCGUUg-- -3'
miRNA:   3'- -UGCUGCGCG---------AAGUUGCGCGGUAAgca -5'
17204 5' -54 NC_004333.2 + 13929 0.79 0.152721
Target:  5'- cGCGGCGCGCUcaaugcgcUCGACgcgGCGCCcgUCGUc -3'
miRNA:   3'- -UGCUGCGCGA--------AGUUG---CGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 32275 0.78 0.161504
Target:  5'- gGCGACGUGC-UCAuCGCGCUcgUCGUc -3'
miRNA:   3'- -UGCUGCGCGaAGUuGCGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 21599 0.78 0.180446
Target:  5'- gACGAUaCGCgUUCGACGCGCCcgUCGa -3'
miRNA:   3'- -UGCUGcGCG-AAGUUGCGCGGuaAGCa -5'
17204 5' -54 NC_004333.2 + 6677 0.77 0.20687
Target:  5'- uGCGACugcgGCGCUgggCGGCGCGCCGUggCGg -3'
miRNA:   3'- -UGCUG----CGCGAa--GUUGCGCGGUAa-GCa -5'
17204 5' -54 NC_004333.2 + 27431 0.77 0.20687
Target:  5'- gGCGACG-GCUgUCGACcagGCGCCAUUCGg -3'
miRNA:   3'- -UGCUGCgCGA-AGUUG---CGCGGUAAGCa -5'
17204 5' -54 NC_004333.2 + 22630 0.77 0.212541
Target:  5'- gACGGCGgGUUUCAccGCGCGCUcgUCGc -3'
miRNA:   3'- -UGCUGCgCGAAGU--UGCGCGGuaAGCa -5'
17204 5' -54 NC_004333.2 + 11831 0.74 0.314437
Target:  5'- gACGGCGCGCUcCAGCuuGCGCCGguacaUCGc -3'
miRNA:   3'- -UGCUGCGCGAaGUUG--CGCGGUa----AGCa -5'
17204 5' -54 NC_004333.2 + 8926 0.73 0.338786
Target:  5'- cGCGACGCgGCUUCGuuCGCGCCGg---- -3'
miRNA:   3'- -UGCUGCG-CGAAGUu-GCGCGGUaagca -5'
17204 5' -54 NC_004333.2 + 14238 0.73 0.355764
Target:  5'- gACGGCGUGCgc--GCGCGCCucuUUCGa -3'
miRNA:   3'- -UGCUGCGCGaaguUGCGCGGu--AAGCa -5'
17204 5' -54 NC_004333.2 + 25406 0.72 0.373332
Target:  5'- gGCGAgCGCGCcugCAGCGUGCCGgcggCGg -3'
miRNA:   3'- -UGCU-GCGCGaa-GUUGCGCGGUaa--GCa -5'
17204 5' -54 NC_004333.2 + 28934 0.72 0.373332
Target:  5'- cACGA-GCGCUUgAGCGCGCCGgcuaCGa -3'
miRNA:   3'- -UGCUgCGCGAAgUUGCGCGGUaa--GCa -5'
17204 5' -54 NC_004333.2 + 46699 0.72 0.39148
Target:  5'- gGCGGCGCGCUaCAAaaaGCuGCCggUCGa -3'
miRNA:   3'- -UGCUGCGCGAaGUUg--CG-CGGuaAGCa -5'
17204 5' -54 NC_004333.2 + 30969 0.72 0.39148
Target:  5'- uCGACGCGC-UCGACGCGuucaaCCAgUCGa -3'
miRNA:   3'- uGCUGCGCGaAGUUGCGC-----GGUaAGCa -5'
17204 5' -54 NC_004333.2 + 25217 0.72 0.400768
Target:  5'- uCGACGC-CcgCGACGCuGCCGUUCGg -3'
miRNA:   3'- uGCUGCGcGaaGUUGCG-CGGUAAGCa -5'
17204 5' -54 NC_004333.2 + 39334 0.72 0.410194
Target:  5'- gGCGGCGCGCUUCuACGaCGCaccgcaggCAUUCa- -3'
miRNA:   3'- -UGCUGCGCGAAGuUGC-GCG--------GUAAGca -5'
17204 5' -54 NC_004333.2 + 47789 0.72 0.419757
Target:  5'- cACGGCGCGC---GACGUGCCGgcgagCGUg -3'
miRNA:   3'- -UGCUGCGCGaagUUGCGCGGUaa---GCA- -5'
17204 5' -54 NC_004333.2 + 12294 0.72 0.419757
Target:  5'- gGCGGCGCGCauugcggcgUCcuGCGCGCCAgccUCGc -3'
miRNA:   3'- -UGCUGCGCGa--------AGu-UGCGCGGUa--AGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.