miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17204 5' -54 NC_004333.2 + 39 0.7 0.490241
Target:  5'- cUGACGCgGCaagUCuAGCGCGCC-UUCGUa -3'
miRNA:   3'- uGCUGCG-CGa--AG-UUGCGCGGuAAGCA- -5'
17204 5' -54 NC_004333.2 + 1261 0.7 0.532905
Target:  5'- cAUGACGUGCUccUUGGCGCGCCGc---- -3'
miRNA:   3'- -UGCUGCGCGA--AGUUGCGCGGUaagca -5'
17204 5' -54 NC_004333.2 + 2518 0.68 0.621493
Target:  5'- uCGGCGCGCaggugUUCGcCGCGCCGUa--- -3'
miRNA:   3'- uGCUGCGCG-----AAGUuGCGCGGUAagca -5'
17204 5' -54 NC_004333.2 + 3621 0.66 0.743002
Target:  5'- cCGACGCGCU---GCGCGgCAccgCGUu -3'
miRNA:   3'- uGCUGCGCGAaguUGCGCgGUaa-GCA- -5'
17204 5' -54 NC_004333.2 + 6601 0.67 0.688564
Target:  5'- cACGGCGCGCcgCccaGCGCCGcagUCGc -3'
miRNA:   3'- -UGCUGCGCGaaGuugCGCGGUa--AGCa -5'
17204 5' -54 NC_004333.2 + 6641 0.67 0.699612
Target:  5'- uCGAuCGCGCUcggCAGCGCGCUcggCGc -3'
miRNA:   3'- uGCU-GCGCGAa--GUUGCGCGGuaaGCa -5'
17204 5' -54 NC_004333.2 + 6677 0.77 0.20687
Target:  5'- uGCGACugcgGCGCUgggCGGCGCGCCGUggCGg -3'
miRNA:   3'- -UGCUG----CGCGAa--GUUGCGCGGUAa-GCa -5'
17204 5' -54 NC_004333.2 + 6701 0.66 0.753589
Target:  5'- uGCGGgGCGCauuggCGACGaGCCAUgCGUg -3'
miRNA:   3'- -UGCUgCGCGaa---GUUGCgCGGUAaGCA- -5'
17204 5' -54 NC_004333.2 + 6822 0.68 0.610287
Target:  5'- -aGGCGCGCgacCGGgGCGCCGUggcgcUCGa -3'
miRNA:   3'- ugCUGCGCGaa-GUUgCGCGGUA-----AGCa -5'
17204 5' -54 NC_004333.2 + 6870 0.66 0.732299
Target:  5'- uGCGACagGCGaagaUCGGCGCGCUG-UCGUa -3'
miRNA:   3'- -UGCUG--CGCga--AGUUGCGCGGUaAGCA- -5'
17204 5' -54 NC_004333.2 + 8305 0.68 0.59575
Target:  5'- gGCGGCGCGCggggcucgCGccccgcuaugcguuACGCGCCcguAUUCGa -3'
miRNA:   3'- -UGCUGCGCGaa------GU--------------UGCGCGG---UAAGCa -5'
17204 5' -54 NC_004333.2 + 8926 0.73 0.338786
Target:  5'- cGCGACGCgGCUUCGuuCGCGCCGg---- -3'
miRNA:   3'- -UGCUGCG-CGAAGUu-GCGCGGUaagca -5'
17204 5' -54 NC_004333.2 + 8990 0.69 0.543786
Target:  5'- cGCGGCG-GCgacCGACGCGgCGUUCGc -3'
miRNA:   3'- -UGCUGCgCGaa-GUUGCGCgGUAAGCa -5'
17204 5' -54 NC_004333.2 + 9139 0.67 0.696304
Target:  5'- cGCGAgGCGCUcacgcagaucggcgUCGACGUGUCGcaggUCGc -3'
miRNA:   3'- -UGCUgCGCGA--------------AGUUGCGCGGUa---AGCa -5'
17204 5' -54 NC_004333.2 + 9143 0.66 0.750426
Target:  5'- cACGuCGCGCUUugccugcucgaccgCAgcuGCGCGCUugcGUUCGUu -3'
miRNA:   3'- -UGCuGCGCGAA--------------GU---UGCGCGG---UAAGCA- -5'
17204 5' -54 NC_004333.2 + 9540 0.71 0.46951
Target:  5'- uCGACGagcuGCUUCAAUgcgGCGCCGaUCGUg -3'
miRNA:   3'- uGCUGCg---CGAAGUUG---CGCGGUaAGCA- -5'
17204 5' -54 NC_004333.2 + 9639 0.7 0.511389
Target:  5'- gGCGGCGCGCcu--GCGCccgGCUGUUCGUu -3'
miRNA:   3'- -UGCUGCGCGaaguUGCG---CGGUAAGCA- -5'
17204 5' -54 NC_004333.2 + 9740 0.7 0.490241
Target:  5'- gGCGACaugaGCGCcggauGCGCGCCcgUCGUc -3'
miRNA:   3'- -UGCUG----CGCGaagu-UGCGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 10631 0.67 0.710591
Target:  5'- uGCGAUGCGCccgauaAACGCGCgAUggcCGUc -3'
miRNA:   3'- -UGCUGCGCGaag---UUGCGCGgUAa--GCA- -5'
17204 5' -54 NC_004333.2 + 11513 0.66 0.721491
Target:  5'- cACGAgGCGCUgCGAagGCGUCAUgUCGa -3'
miRNA:   3'- -UGCUgCGCGAaGUUg-CGCGGUA-AGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.