miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17204 5' -54 NC_004333.2 + 41555 0.9 0.02398
Target:  5'- cGCGAUGCucacgaccgGCUUCAACGCGCCAUUCGUu -3'
miRNA:   3'- -UGCUGCG---------CGAAGUUGCGCGGUAAGCA- -5'
17204 5' -54 NC_004333.2 + 45032 0.7 0.500766
Target:  5'- cGCGugGCGCUggCGGCGCGCaaa-CGc -3'
miRNA:   3'- -UGCugCGCGAa-GUUGCGCGguaaGCa -5'
17204 5' -54 NC_004333.2 + 23233 0.7 0.511389
Target:  5'- cACGGCG-GCg--AACGCGCCggUCGUg -3'
miRNA:   3'- -UGCUGCgCGaagUUGCGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 20211 0.66 0.764047
Target:  5'- cGCGGCucGCGCuUUCGugGCGgCGaUCGa -3'
miRNA:   3'- -UGCUG--CGCG-AAGUugCGCgGUaAGCa -5'
17204 5' -54 NC_004333.2 + 8926 0.73 0.338786
Target:  5'- cGCGACGCgGCUUCGuuCGCGCCGg---- -3'
miRNA:   3'- -UGCUGCG-CGAAGUu-GCGCGGUaagca -5'
17204 5' -54 NC_004333.2 + 14238 0.73 0.355764
Target:  5'- gACGGCGUGCgc--GCGCGCCucuUUCGa -3'
miRNA:   3'- -UGCUGCGCGaaguUGCGCGGu--AAGCa -5'
17204 5' -54 NC_004333.2 + 46699 0.72 0.39148
Target:  5'- gGCGGCGCGCUaCAAaaaGCuGCCggUCGa -3'
miRNA:   3'- -UGCUGCGCGAaGUUg--CG-CGGuaAGCa -5'
17204 5' -54 NC_004333.2 + 25217 0.72 0.400768
Target:  5'- uCGACGC-CcgCGACGCuGCCGUUCGg -3'
miRNA:   3'- uGCUGCGcGaaGUUGCG-CGGUAAGCa -5'
17204 5' -54 NC_004333.2 + 23916 0.71 0.446236
Target:  5'- aACGGCGCGUacgUCAGCGUcuuguagacguaguGCgGUUCGUg -3'
miRNA:   3'- -UGCUGCGCGa--AGUUGCG--------------CGgUAAGCA- -5'
17204 5' -54 NC_004333.2 + 9740 0.7 0.490241
Target:  5'- gGCGACaugaGCGCcggauGCGCGCCcgUCGUc -3'
miRNA:   3'- -UGCUG----CGCGaagu-UGCGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 9540 0.71 0.46951
Target:  5'- uCGACGagcuGCUUCAAUgcgGCGCCGaUCGUg -3'
miRNA:   3'- uGCUGCg---CGAAGUUG---CGCGGUaAGCA- -5'
17204 5' -54 NC_004333.2 + 12294 0.72 0.419757
Target:  5'- gGCGGCGCGCauugcggcgUCcuGCGCGCCAgccUCGc -3'
miRNA:   3'- -UGCUGCGCGa--------AGu-UGCGCGGUa--AGCa -5'
17204 5' -54 NC_004333.2 + 23611 0.79 0.144372
Target:  5'- aGCGAUGCGCgcgaccuggUUCAACGCGCCGUUg-- -3'
miRNA:   3'- -UGCUGCGCG---------AAGUUGCGCGGUAAgca -5'
17204 5' -54 NC_004333.2 + 44283 0.7 0.479821
Target:  5'- uUGuuGCGCa-CAAUGCGCCGUUCGa -3'
miRNA:   3'- uGCugCGCGaaGUUGCGCGGUAAGCa -5'
17204 5' -54 NC_004333.2 + 27431 0.77 0.20687
Target:  5'- gGCGACG-GCUgUCGACcagGCGCCAUUCGg -3'
miRNA:   3'- -UGCUGCgCGA-AGUUG---CGCGGUAAGCa -5'
17204 5' -54 NC_004333.2 + 39334 0.72 0.410194
Target:  5'- gGCGGCGCGCUUCuACGaCGCaccgcaggCAUUCa- -3'
miRNA:   3'- -UGCUGCGCGAAGuUGC-GCG--------GUAAGca -5'
17204 5' -54 NC_004333.2 + 39 0.7 0.490241
Target:  5'- cUGACGCgGCaagUCuAGCGCGCC-UUCGUa -3'
miRNA:   3'- uGCUGCG-CGa--AG-UUGCGCGGuAAGCA- -5'
17204 5' -54 NC_004333.2 + 18178 0.7 0.500766
Target:  5'- cCGGCGUGCcgggUGAUGCGCUcgUCGUg -3'
miRNA:   3'- uGCUGCGCGaa--GUUGCGCGGuaAGCA- -5'
17204 5' -54 NC_004333.2 + 11831 0.74 0.314437
Target:  5'- gACGGCGCGCUcCAGCuuGCGCCGguacaUCGc -3'
miRNA:   3'- -UGCUGCGCGAaGUUG--CGCGGUa----AGCa -5'
17204 5' -54 NC_004333.2 + 25406 0.72 0.373332
Target:  5'- gGCGAgCGCGCcugCAGCGUGCCGgcggCGg -3'
miRNA:   3'- -UGCU-GCGCGaa-GUUGCGCGGUaa--GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.