miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17205 3' -63.6 NC_004333.2 + 41815 1.1 0.000129
Target:  5'- aGCUGCCCGACGGCACGACGGCGCCCGg -3'
miRNA:   3'- -CGACGGGCUGCCGUGCUGCCGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 9632 0.81 0.024632
Target:  5'- gGCUG-CCGGCGGCGCGcCuGCGCCCGg -3'
miRNA:   3'- -CGACgGGCUGCCGUGCuGcCGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 3298 0.8 0.02995
Target:  5'- uGCUGCCCGGCgucaucggGGCG-GGCGGCGCgCCGg -3'
miRNA:   3'- -CGACGGGCUG--------CCGUgCUGCCGCG-GGC- -5'
17205 3' -63.6 NC_004333.2 + 44384 0.79 0.036395
Target:  5'- cGCUGCUCGGCGGCGCGugcGCGGUacaacgGCCUGc -3'
miRNA:   3'- -CGACGGGCUGCCGUGC---UGCCG------CGGGC- -5'
17205 3' -63.6 NC_004333.2 + 20592 0.78 0.042987
Target:  5'- gGCcGCCagCGAgCGGCGCGGCGGCGgCCGg -3'
miRNA:   3'- -CGaCGG--GCU-GCCGUGCUGCCGCgGGC- -5'
17205 3' -63.6 NC_004333.2 + 12288 0.76 0.055115
Target:  5'- --gGCaCCGGCGGCGCGcauuGCGGCGUCCu -3'
miRNA:   3'- cgaCG-GGCUGCCGUGC----UGCCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 2383 0.76 0.056652
Target:  5'- gGCguaGCCCauGACGGCGcCGGCGGuCGCCUGg -3'
miRNA:   3'- -CGa--CGGG--CUGCCGU-GCUGCC-GCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 22863 0.75 0.074489
Target:  5'- uGCgGCCCGGCgaucGGCGCGAucguacUGGCGCUCGu -3'
miRNA:   3'- -CGaCGGGCUG----CCGUGCU------GCCGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 45011 0.75 0.075304
Target:  5'- cGCUGUCCGGCcgcucgaccgcgcguGGCGCuGGCGGCGCgCa -3'
miRNA:   3'- -CGACGGGCUG---------------CCGUG-CUGCCGCGgGc -5'
17205 3' -63.6 NC_004333.2 + 19627 0.74 0.087661
Target:  5'- uGCcGCgCCGACcGUGCGAcCGGCGCCCa -3'
miRNA:   3'- -CGaCG-GGCUGcCGUGCU-GCCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 32353 0.73 0.095051
Target:  5'- cGCUGCCCGauagcgugcGCaGCACGACGuucaGCGCCgCGu -3'
miRNA:   3'- -CGACGGGC---------UGcCGUGCUGC----CGCGG-GC- -5'
17205 3' -63.6 NC_004333.2 + 47950 0.73 0.097644
Target:  5'- aGCUGCUCGGCGcGCugGucguCGGCGUCa- -3'
miRNA:   3'- -CGACGGGCUGC-CGugCu---GCCGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 15379 0.73 0.097644
Target:  5'- cCUGCUCGACGGCAa----GCGCCCGg -3'
miRNA:   3'- cGACGGGCUGCCGUgcugcCGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 13832 0.73 0.100302
Target:  5'- cGCcGCgCGAgCGGCGCG-CGGCGUCCu -3'
miRNA:   3'- -CGaCGgGCU-GCCGUGCuGCCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 5222 0.73 0.103029
Target:  5'- cGCUGCUCGACaaCACgGGCGGCucGCCCGu -3'
miRNA:   3'- -CGACGGGCUGccGUG-CUGCCG--CGGGC- -5'
17205 3' -63.6 NC_004333.2 + 38482 0.72 0.108694
Target:  5'- cGCUGCCgcaauggGACGGCACG-CaGCGCCuCGa -3'
miRNA:   3'- -CGACGGg------CUGCCGUGCuGcCGCGG-GC- -5'
17205 3' -63.6 NC_004333.2 + 19706 0.72 0.111337
Target:  5'- uGCUGCUCGcgugcuCGGCGCugguggcgugcaaGACGGCGCCg- -3'
miRNA:   3'- -CGACGGGCu-----GCCGUG-------------CUGCCGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 33380 0.72 0.112831
Target:  5'- uGCUGCCCGAucgcguagaaCGGCgaugccugcggcgcaGCGACuGCGCgCCGa -3'
miRNA:   3'- -CGACGGGCU----------GCCG---------------UGCUGcCGCG-GGC- -5'
17205 3' -63.6 NC_004333.2 + 15499 0.72 0.11465
Target:  5'- gGCUGCUCG-CGGCGgucacCGGCGGCGCgUCa -3'
miRNA:   3'- -CGACGGGCuGCCGU-----GCUGCCGCG-GGc -5'
17205 3' -63.6 NC_004333.2 + 7019 0.72 0.11774
Target:  5'- uGC-GCUCGAUGGUucaggcuuCGACuGGCGCCCGc -3'
miRNA:   3'- -CGaCGGGCUGCCGu-------GCUG-CCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.