miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17205 3' -63.6 NC_004333.2 + 619 0.66 0.293315
Target:  5'- -gUGCCCGACaGCGgGcCGGUGCUg- -3'
miRNA:   3'- cgACGGGCUGcCGUgCuGCCGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 771 0.7 0.161347
Target:  5'- cGCUcGCgggCGGCGGCACGAUcGCGCUCa -3'
miRNA:   3'- -CGA-CGg--GCUGCCGUGCUGcCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 2018 0.67 0.250233
Target:  5'- -aUGCCCGACGuCACGGCcGCaucgaucacgucgacGCCCGc -3'
miRNA:   3'- cgACGGGCUGCcGUGCUGcCG---------------CGGGC- -5'
17205 3' -63.6 NC_004333.2 + 2383 0.76 0.056652
Target:  5'- gGCguaGCCCauGACGGCGcCGGCGGuCGCCUGg -3'
miRNA:   3'- -CGa--CGGG--CUGCCGU-GCUGCC-GCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 2413 0.7 0.161347
Target:  5'- aGCUGCgCaACGGC-CGcACGGUGCUCGc -3'
miRNA:   3'- -CGACGgGcUGCCGuGC-UGCCGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 2432 0.68 0.22395
Target:  5'- aGCgUGCCUugguACGGCGCGGCGaacaccuGCGCgCCGa -3'
miRNA:   3'- -CG-ACGGGc---UGCCGUGCUGC-------CGCG-GGC- -5'
17205 3' -63.6 NC_004333.2 + 2482 0.66 0.307466
Target:  5'- cGCUGCCgcUGuACGGCgaccagGCGAccgcCGGCGCCg- -3'
miRNA:   3'- -CGACGG--GC-UGCCG------UGCU----GCCGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 2500 0.67 0.275686
Target:  5'- cGCUGCCuCGAgaucgGGCGCGACGuacauguauuuguaCGCCUGa -3'
miRNA:   3'- -CGACGG-GCUg----CCGUGCUGCc-------------GCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 3298 0.8 0.02995
Target:  5'- uGCUGCCCGGCgucaucggGGCG-GGCGGCGCgCCGg -3'
miRNA:   3'- -CGACGGGCUG--------CCGUgCUGCCGCG-GGC- -5'
17205 3' -63.6 NC_004333.2 + 3793 0.69 0.183493
Target:  5'- --cGCCCGGgGGUGCGcgaGGCGCUCa -3'
miRNA:   3'- cgaCGGGCUgCCGUGCug-CCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 3914 0.7 0.169901
Target:  5'- aGC-GCCaGGCGGCAgCGGCGGCaGgCCGa -3'
miRNA:   3'- -CGaCGGgCUGCCGU-GCUGCCG-CgGGC- -5'
17205 3' -63.6 NC_004333.2 + 4715 0.71 0.137971
Target:  5'- cCUGCCCGuCGccaugauCGCGAUGGCGCUCa -3'
miRNA:   3'- cGACGGGCuGCc------GUGCUGCCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 5222 0.73 0.103029
Target:  5'- cGCUGCUCGACaaCACgGGCGGCucGCCCGu -3'
miRNA:   3'- -CGACGGGCUGccGUG-CUGCCG--CGGGC- -5'
17205 3' -63.6 NC_004333.2 + 6679 0.68 0.213576
Target:  5'- cCUGCgaCuGCGGCGCugGGCGGCGCgCCGu -3'
miRNA:   3'- cGACGg-GcUGCCGUG--CUGCCGCG-GGC- -5'
17205 3' -63.6 NC_004333.2 + 7019 0.72 0.11774
Target:  5'- uGC-GCUCGAUGGUucaggcuuCGACuGGCGCCCGc -3'
miRNA:   3'- -CGaCGGGCUGCCGu-------GCUG-CCGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 8007 0.69 0.208283
Target:  5'- --cGUCCGACGGCgACaGCGGCGCg-- -3'
miRNA:   3'- cgaCGGGCUGCCG-UGcUGCCGCGggc -5'
17205 3' -63.6 NC_004333.2 + 8528 0.67 0.253923
Target:  5'- --cGCCCGugccgaACaGCGCGAcCGGCauGCCCGg -3'
miRNA:   3'- cgaCGGGC------UGcCGUGCU-GCCG--CGGGC- -5'
17205 3' -63.6 NC_004333.2 + 8632 0.69 0.198037
Target:  5'- -aUGCgCGACGucgaGCuCGgcGCGGCGCCCGg -3'
miRNA:   3'- cgACGgGCUGC----CGuGC--UGCCGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 8971 0.7 0.165575
Target:  5'- gGCUGgaUCGugGGCcgugcGCGGCGGCGaCCGa -3'
miRNA:   3'- -CGACg-GGCugCCG-----UGCUGCCGCgGGC- -5'
17205 3' -63.6 NC_004333.2 + 9347 0.7 0.165575
Target:  5'- -aUGCUCGucguCGGCGCG-CGGCGUCgGg -3'
miRNA:   3'- cgACGGGCu---GCCGUGCuGCCGCGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.