Results 1 - 20 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17205 | 3' | -63.6 | NC_004333.2 | + | 41815 | 1.1 | 0.000129 |
Target: 5'- aGCUGCCCGACGGCACGACGGCGCCCGg -3' miRNA: 3'- -CGACGGGCUGCCGUGCUGCCGCGGGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 25115 | 0.71 | 0.141639 |
Target: 5'- --gGCaCGGCGaGCACGGCGGCGCgCa -3' miRNA: 3'- cgaCGgGCUGC-CGUGCUGCCGCGgGc -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 20836 | 0.7 | 0.161347 |
Target: 5'- cCUGCCCGACGG-GCGGCcGCGCauCCu -3' miRNA: 3'- cGACGGGCUGCCgUGCUGcCGCG--GGc -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 22461 | 0.66 | 0.329661 |
Target: 5'- cCUGCCCGA-GGCuCGugaacAUGGUGUCCa -3' miRNA: 3'- cGACGGGCUgCCGuGC-----UGCCGCGGGc -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 2383 | 0.76 | 0.056652 |
Target: 5'- gGCguaGCCCauGACGGCGcCGGCGGuCGCCUGg -3' miRNA: 3'- -CGa--CGGG--CUGCCGU-GCUGCC-GCGGGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 22863 | 0.75 | 0.074489 |
Target: 5'- uGCgGCCCGGCgaucGGCGCGAucguacUGGCGCUCGu -3' miRNA: 3'- -CGaCGGGCUG----CCGUGCU------GCCGCGGGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 32353 | 0.73 | 0.095051 |
Target: 5'- cGCUGCCCGauagcgugcGCaGCACGACGuucaGCGCCgCGu -3' miRNA: 3'- -CGACGGGC---------UGcCGUGCUGC----CGCGG-GC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 47950 | 0.73 | 0.097644 |
Target: 5'- aGCUGCUCGGCGcGCugGucguCGGCGUCa- -3' miRNA: 3'- -CGACGGGCUGC-CGugCu---GCCGCGGgc -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 33380 | 0.72 | 0.112831 |
Target: 5'- uGCUGCCCGAucgcguagaaCGGCgaugccugcggcgcaGCGACuGCGCgCCGa -3' miRNA: 3'- -CGACGGGCU----------GCCG---------------UGCUGcCGCG-GGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 11908 | 0.71 | 0.137971 |
Target: 5'- cGCgGCCCGGCauGCGCaGCGGCGCgCGc -3' miRNA: 3'- -CGaCGGGCUGc-CGUGcUGCCGCGgGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 31156 | 0.71 | 0.13439 |
Target: 5'- cGCcGCCCGccuUGGCAUcgccgcccaGACGGCGCgCCGu -3' miRNA: 3'- -CGaCGGGCu--GCCGUG---------CUGCCGCG-GGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 19706 | 0.72 | 0.111337 |
Target: 5'- uGCUGCUCGcgugcuCGGCGCugguggcgugcaaGACGGCGCCg- -3' miRNA: 3'- -CGACGGGCu-----GCCGUG-------------CUGCCGCGGgc -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 9632 | 0.81 | 0.024632 |
Target: 5'- gGCUG-CCGGCGGCGCGcCuGCGCCCGg -3' miRNA: 3'- -CGACgGGCUGCCGUGCuGcCGCGGGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 31308 | 0.71 | 0.13439 |
Target: 5'- cCUGCgCCGACGccgaGC-ACGGCGCCCGc -3' miRNA: 3'- cGACG-GGCUGCcg--UGcUGCCGCGGGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 44384 | 0.79 | 0.036395 |
Target: 5'- cGCUGCUCGGCGGCGCGugcGCGGUacaacgGCCUGc -3' miRNA: 3'- -CGACGGGCUGCCGUGC---UGCCG------CGGGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 38482 | 0.72 | 0.108694 |
Target: 5'- cGCUGCCgcaauggGACGGCACG-CaGCGCCuCGa -3' miRNA: 3'- -CGACGGg------CUGCCGUGCuGcCGCGG-GC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 41314 | 0.71 | 0.135812 |
Target: 5'- aGCUcGCCCGGCGcgcgauggacgugacGCGCGAguguguacgugUGGCGCUCGa -3' miRNA: 3'- -CGA-CGGGCUGC---------------CGUGCU-----------GCCGCGGGC- -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 42960 | 0.71 | 0.144259 |
Target: 5'- cGCUGCaacccgcacccucgCCGGCGGacgaGCgGGCGGCGCUCu -3' miRNA: 3'- -CGACG--------------GGCUGCCg---UG-CUGCCGCGGGc -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 12288 | 0.76 | 0.055115 |
Target: 5'- --gGCaCCGGCGGCGCGcauuGCGGCGUCCu -3' miRNA: 3'- cgaCG-GGCUGCCGUGC----UGCCGCGGGc -5' |
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17205 | 3' | -63.6 | NC_004333.2 | + | 45011 | 0.75 | 0.075304 |
Target: 5'- cGCUGUCCGGCcgcucgaccgcgcguGGCGCuGGCGGCGCgCa -3' miRNA: 3'- -CGACGGGCUG---------------CCGUG-CUGCCGCGgGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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