Results 1 - 20 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 42122 | 1.09 | 0.000552 |
Target: 5'- gUGCGCCAGUUGCCGGUGCACGACAUGa -3' miRNA: 3'- -ACGCGGUCAACGGCCACGUGCUGUAC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 9998 | 0.83 | 0.046965 |
Target: 5'- uUGCGCgGGUUGUCGGccgucUGCGCGACGUGc -3' miRNA: 3'- -ACGCGgUCAACGGCC-----ACGUGCUGUAC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 19554 | 0.76 | 0.140572 |
Target: 5'- gGCGCCGGUcGCaCGGUcgGCGCGGCAc- -3' miRNA: 3'- aCGCGGUCAaCG-GCCA--CGUGCUGUac -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 10674 | 0.76 | 0.148636 |
Target: 5'- cGCGCCg---GCCGGUGCACGcUAUGc -3' miRNA: 3'- aCGCGGucaaCGGCCACGUGCuGUAC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 13101 | 0.76 | 0.148636 |
Target: 5'- cGCaGCCAGUUGUCGaUGUACGGCAUc -3' miRNA: 3'- aCG-CGGUCAACGGCcACGUGCUGUAc -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 46347 | 0.75 | 0.166039 |
Target: 5'- cGUGCCAGUUGUCGGUGUAauCGGgGUc -3' miRNA: 3'- aCGCGGUCAACGGCCACGU--GCUgUAc -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 20660 | 0.74 | 0.200919 |
Target: 5'- cUGCGCCAGUgGCaggaGGcGCACGGgAUGa -3' miRNA: 3'- -ACGCGGUCAaCGg---CCaCGUGCUgUAC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 41994 | 0.73 | 0.206393 |
Target: 5'- cGCGCCaAGgcuuccUGUCGGUGCGCGugAa- -3' miRNA: 3'- aCGCGG-UCa-----ACGGCCACGUGCugUac -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 5611 | 0.72 | 0.241999 |
Target: 5'- cGCGCCAagccGUcGCCGGc-CACGGCAUGa -3' miRNA: 3'- aCGCGGU----CAaCGGCCacGUGCUGUAC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 801 | 0.72 | 0.261648 |
Target: 5'- cGUGCCGGUcGCCGGcGCAgGACc-- -3' miRNA: 3'- aCGCGGUCAaCGGCCaCGUgCUGuac -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 11708 | 0.72 | 0.261648 |
Target: 5'- aGCGCCGGgcggcgUGCUGGcguccUGCGCGAUGUc -3' miRNA: 3'- aCGCGGUCa-----ACGGCC-----ACGUGCUGUAc -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 38376 | 0.72 | 0.26848 |
Target: 5'- -uCGCCGGUcGCCGcGUGCACGgucgcGCGUGc -3' miRNA: 3'- acGCGGUCAaCGGC-CACGUGC-----UGUAC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 44446 | 0.72 | 0.275456 |
Target: 5'- gGCGCuCGGccUGCCGGUGCAaaagGACAc- -3' miRNA: 3'- aCGCG-GUCa-ACGGCCACGUg---CUGUac -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 31362 | 0.71 | 0.297252 |
Target: 5'- gGCGCaGGUgcgGCCGGUcucGC-CGGCAUGg -3' miRNA: 3'- aCGCGgUCAa--CGGCCA---CGuGCUGUAC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 23486 | 0.71 | 0.297252 |
Target: 5'- gGCGgCGGguacgUGCCGGgcuaccaGUACGGCGUGa -3' miRNA: 3'- aCGCgGUCa----ACGGCCa------CGUGCUGUAC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 9692 | 0.71 | 0.312512 |
Target: 5'- cGcCGCCGGcaGCCGGUGCGCaACcgGc -3' miRNA: 3'- aC-GCGGUCaaCGGCCACGUGcUGuaC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 11847 | 0.7 | 0.325945 |
Target: 5'- uUGCGCCGGUacaucgcuuccgucUGCCGGUcggccgaaacggGCGCGAgCAc- -3' miRNA: 3'- -ACGCGGUCA--------------ACGGCCA------------CGUGCU-GUac -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 20576 | 0.7 | 0.352378 |
Target: 5'- cGCGgCGGcgGCCGGcagcgguUGCGCGGCAg- -3' miRNA: 3'- aCGCgGUCaaCGGCC-------ACGUGCUGUac -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 23042 | 0.69 | 0.370534 |
Target: 5'- aGCGUCuGGUUGCCcGUGUAgGugGUGa -3' miRNA: 3'- aCGCGG-UCAACGGcCACGUgCugUAC- -5' |
|||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 25442 | 0.69 | 0.3794 |
Target: 5'- -aCGCCGGgcgUGCCGGU-UACGACGa- -3' miRNA: 3'- acGCGGUCa--ACGGCCAcGUGCUGUac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home