miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17206 5' -56.8 NC_004333.2 + 234 0.66 0.582119
Target:  5'- cGCGCCAGgcGCCGaucguGUGCucgcgccgaaucACGACu-- -3'
miRNA:   3'- aCGCGGUCaaCGGC-----CACG------------UGCUGuac -5'
17206 5' -56.8 NC_004333.2 + 801 0.72 0.261648
Target:  5'- cGUGCCGGUcGCCGGcGCAgGACc-- -3'
miRNA:   3'- aCGCGGUCAaCGGCCaCGUgCUGuac -5'
17206 5' -56.8 NC_004333.2 + 1341 0.67 0.496084
Target:  5'- cGCGCCAGgcggcgcGCCaaGGaGCACGuCAUGc -3'
miRNA:   3'- aCGCGGUCaa-----CGG--CCaCGUGCuGUAC- -5'
17206 5' -56.8 NC_004333.2 + 2005 0.66 0.5602
Target:  5'- cGuCGCCGGUgcgggccaGCUGGUGCagACG-CGUGg -3'
miRNA:   3'- aC-GCGGUCAa-------CGGCCACG--UGCuGUAC- -5'
17206 5' -56.8 NC_004333.2 + 5037 0.66 0.582119
Target:  5'- gGCgGCCAGgcgGCCGGcuguugGC-CGACGUc -3'
miRNA:   3'- aCG-CGGUCaa-CGGCCa-----CGuGCUGUAc -5'
17206 5' -56.8 NC_004333.2 + 5611 0.72 0.241999
Target:  5'- cGCGCCAagccGUcGCCGGc-CACGGCAUGa -3'
miRNA:   3'- aCGCGGU----CAaCGGCCacGUGCUGUAC- -5'
17206 5' -56.8 NC_004333.2 + 6998 0.67 0.496084
Target:  5'- gUGCuGCgAGUUgGCCGGUGCagauucaucaaACGGCGa- -3'
miRNA:   3'- -ACG-CGgUCAA-CGGCCACG-----------UGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 9056 0.66 0.5602
Target:  5'- cGCGUCGGUcGCCGccgcGCACGGCc-- -3'
miRNA:   3'- aCGCGGUCAaCGGCca--CGUGCUGuac -5'
17206 5' -56.8 NC_004333.2 + 9228 0.66 0.5602
Target:  5'- aGCGCgCAGcUG-CGGUcgagcaggcaaaGCGCGACGUGc -3'
miRNA:   3'- aCGCG-GUCaACgGCCA------------CGUGCUGUAC- -5'
17206 5' -56.8 NC_004333.2 + 9692 0.71 0.312512
Target:  5'- cGcCGCCGGcaGCCGGUGCGCaACcgGc -3'
miRNA:   3'- aC-GCGGUCaaCGGCCACGUGcUGuaC- -5'
17206 5' -56.8 NC_004333.2 + 9998 0.83 0.046965
Target:  5'- uUGCGCgGGUUGUCGGccgucUGCGCGACGUGc -3'
miRNA:   3'- -ACGCGgUCAACGGCC-----ACGUGCUGUAC- -5'
17206 5' -56.8 NC_004333.2 + 10674 0.76 0.148636
Target:  5'- cGCGCCg---GCCGGUGCACGcUAUGc -3'
miRNA:   3'- aCGCGGucaaCGGCCACGUGCuGUAC- -5'
17206 5' -56.8 NC_004333.2 + 11708 0.72 0.261648
Target:  5'- aGCGCCGGgcggcgUGCUGGcguccUGCGCGAUGUc -3'
miRNA:   3'- aCGCGGUCa-----ACGGCC-----ACGUGCUGUAc -5'
17206 5' -56.8 NC_004333.2 + 11808 0.67 0.52778
Target:  5'- gGUGCCGGUcggcUGCCGGacaucgcGCAgGACGc- -3'
miRNA:   3'- aCGCGGUCA----ACGGCCa------CGUgCUGUac -5'
17206 5' -56.8 NC_004333.2 + 11847 0.7 0.325945
Target:  5'- uUGCGCCGGUacaucgcuuccgucUGCCGGUcggccgaaacggGCGCGAgCAc- -3'
miRNA:   3'- -ACGCGGUCA--------------ACGGCCA------------CGUGCU-GUac -5'
17206 5' -56.8 NC_004333.2 + 11980 0.66 0.538515
Target:  5'- cGCGCCGcugcgcaUGCCGGgccGCgACGACAa- -3'
miRNA:   3'- aCGCGGUca-----ACGGCCa--CG-UGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 12402 0.68 0.445299
Target:  5'- cGCGCCAGUgucGCCGccuucggccaaGcGCugGACGUa -3'
miRNA:   3'- aCGCGGUCAa--CGGC-----------CaCGugCUGUAc -5'
17206 5' -56.8 NC_004333.2 + 13101 0.76 0.148636
Target:  5'- cGCaGCCAGUUGUCGaUGUACGGCAUc -3'
miRNA:   3'- aCG-CGGUCAACGGCcACGUGCUGUAc -5'
17206 5' -56.8 NC_004333.2 + 13879 0.68 0.424851
Target:  5'- cGCGCCgcgcgaAGUcgGCCGGcacgggcUGCGCGGCGg- -3'
miRNA:   3'- aCGCGG------UCAa-CGGCC-------ACGUGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 17517 0.69 0.388409
Target:  5'- uUGCGCCAcau-CCGGUGCccggGCGACGUu -3'
miRNA:   3'- -ACGCGGUcaacGGCCACG----UGCUGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.