Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17206 | 5' | -56.8 | NC_004333.2 | + | 42122 | 1.09 | 0.000552 |
Target: 5'- gUGCGCCAGUUGCCGGUGCACGACAUGa -3' miRNA: 3'- -ACGCGGUCAACGGCCACGUGCUGUAC- -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 31214 | 0.68 | 0.455228 |
Target: 5'- -uUGCCGGUuggucaUGCCGGU-CGCGACGg- -3' miRNA: 3'- acGCGGUCA------ACGGCCAcGUGCUGUac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 47490 | 0.67 | 0.485708 |
Target: 5'- cGCGCUgaacgAGgcGCCGGccgGCGCGACc-- -3' miRNA: 3'- aCGCGG-----UCaaCGGCCa--CGUGCUGuac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 40852 | 0.66 | 0.593146 |
Target: 5'- cGCGCCuucuGGUcGCCGGcgauggucGCGCGACu-- -3' miRNA: 3'- aCGCGG----UCAaCGGCCa-------CGUGCUGuac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 13101 | 0.76 | 0.148636 |
Target: 5'- cGCaGCCAGUUGUCGaUGUACGGCAUc -3' miRNA: 3'- aCG-CGGUCAACGGCcACGUGCUGUAc -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 20660 | 0.74 | 0.200919 |
Target: 5'- cUGCGCCAGUgGCaggaGGcGCACGGgAUGa -3' miRNA: 3'- -ACGCGGUCAaCGg---CCaCGUGCUgUAC- -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 11708 | 0.72 | 0.261648 |
Target: 5'- aGCGCCGGgcggcgUGCUGGcguccUGCGCGAUGUc -3' miRNA: 3'- aCGCGGUCa-----ACGGCC-----ACGUGCUGUAc -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 801 | 0.72 | 0.261648 |
Target: 5'- cGUGCCGGUcGCCGGcGCAgGACc-- -3' miRNA: 3'- aCGCGGUCAaCGGCCaCGUgCUGuac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 23042 | 0.69 | 0.370534 |
Target: 5'- aGCGUCuGGUUGCCcGUGUAgGugGUGa -3' miRNA: 3'- aCGCGG-UCAACGGcCACGUgCugUAC- -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 12402 | 0.68 | 0.445299 |
Target: 5'- cGCGCCAGUgucGCCGccuucggccaaGcGCugGACGUa -3' miRNA: 3'- aCGCGGUCAa--CGGC-----------CaCGugCUGUAc -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 38599 | 0.69 | 0.406841 |
Target: 5'- aGCGCCAGcuacaGCCGG-GCGCGcCGc- -3' miRNA: 3'- aCGCGGUCaa---CGGCCaCGUGCuGUac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 11847 | 0.7 | 0.325945 |
Target: 5'- uUGCGCCGGUacaucgcuuccgucUGCCGGUcggccgaaacggGCGCGAgCAc- -3' miRNA: 3'- -ACGCGGUCA--------------ACGGCCA------------CGUGCU-GUac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 9998 | 0.83 | 0.046965 |
Target: 5'- uUGCGCgGGUUGUCGGccgucUGCGCGACGUGc -3' miRNA: 3'- -ACGCGgUCAACGGCC-----ACGUGCUGUAC- -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 13879 | 0.68 | 0.424851 |
Target: 5'- cGCGCCgcgcgaAGUcgGCCGGcacgggcUGCGCGGCGg- -3' miRNA: 3'- aCGCGG------UCAa-CGGCC-------ACGUGCUGUac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 19554 | 0.76 | 0.140572 |
Target: 5'- gGCGCCGGUcGCaCGGUcgGCGCGGCAc- -3' miRNA: 3'- aCGCGGUCAaCG-GCCA--CGUGCUGUac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 44446 | 0.72 | 0.275456 |
Target: 5'- gGCGCuCGGccUGCCGGUGCAaaagGACAc- -3' miRNA: 3'- aCGCG-GUCa-ACGGCCACGUg---CUGUac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 28147 | 0.68 | 0.432575 |
Target: 5'- cGCGCCgccgaGGUUGacagcgauacgcauCCGGUGCuCGACAa- -3' miRNA: 3'- aCGCGG-----UCAAC--------------GGCCACGuGCUGUac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 37201 | 0.68 | 0.455228 |
Target: 5'- cGCGCCGG-UGCCGaGUuccGCcGCGACGc- -3' miRNA: 3'- aCGCGGUCaACGGC-CA---CG-UGCUGUac -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 10674 | 0.76 | 0.148636 |
Target: 5'- cGCGCCg---GCCGGUGCACGcUAUGc -3' miRNA: 3'- aCGCGGucaaCGGCCACGUGCuGUAC- -5' |
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17206 | 5' | -56.8 | NC_004333.2 | + | 41994 | 0.73 | 0.206393 |
Target: 5'- cGCGCCaAGgcuuccUGUCGGUGCGCGugAa- -3' miRNA: 3'- aCGCGG-UCa-----ACGGCCACGUGCugUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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