miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 14505 0.7 0.578911
Target:  5'- aCGAGCGUG-UGUgGCugAUCGAcuGGCg -3'
miRNA:   3'- gGCUUGCACuGCGgCGugUAGCU--CUG- -5'
17208 3' -53.8 NC_004333.2 + 40097 0.7 0.578911
Target:  5'- uCCGcgcCGUGGCGCCGCGCGaguucCGuGAUc -3'
miRNA:   3'- -GGCuu-GCACUGCGGCGUGUa----GCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 26813 0.7 0.578911
Target:  5'- cCUGAACGgGGCGCCGaCGCAaUGGGuCa -3'
miRNA:   3'- -GGCUUGCaCUGCGGC-GUGUaGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 47690 0.7 0.578911
Target:  5'- aUCGAACGUGcCGCC-CAUcUCGGcGACg -3'
miRNA:   3'- -GGCUUGCACuGCGGcGUGuAGCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 5664 0.69 0.589895
Target:  5'- cCUGAACGUGcGCaugcccgaugGCCGCACaAUCGAG-Cu -3'
miRNA:   3'- -GGCUUGCAC-UG----------CGGCGUG-UAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 23824 0.69 0.600915
Target:  5'- -aGAACGacuCGUCGCGCGUCGAG-Cu -3'
miRNA:   3'- ggCUUGCacuGCGGCGUGUAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 44999 0.69 0.600915
Target:  5'- gCCGAcuucuuCGgcGCGCgCGaCGCAUCGAGACg -3'
miRNA:   3'- -GGCUu-----GCacUGCG-GC-GUGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 37496 0.69 0.600915
Target:  5'- gCCGcaguacACGUGcACGCCGCGCAaaccgCGAG-Cg -3'
miRNA:   3'- -GGCu-----UGCAC-UGCGGCGUGUa----GCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 17500 0.69 0.611963
Target:  5'- cCCGGGCGacguuuUGAuCGUCaGCGCGUCGuGACc -3'
miRNA:   3'- -GGCUUGC------ACU-GCGG-CGUGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 32161 0.69 0.619707
Target:  5'- aCUGAACGcgccGACGCCGaucuaugcgaucguCGCGUCG-GACa -3'
miRNA:   3'- -GGCUUGCa---CUGCGGC--------------GUGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 18481 0.69 0.623028
Target:  5'- gCCGAucGCGaGGCGuuGCGCuUCG-GACg -3'
miRNA:   3'- -GGCU--UGCaCUGCggCGUGuAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 34735 0.69 0.623028
Target:  5'- gCCGcccuuaguuGACGUGACGCCGC-CcgCGAu-- -3'
miRNA:   3'- -GGC---------UUGCACUGCGGCGuGuaGCUcug -5'
17208 3' -53.8 NC_004333.2 + 18167 0.69 0.634101
Target:  5'- cCCGAAUGcgGACGUgGCGCGcUCGcAGAg -3'
miRNA:   3'- -GGCUUGCa-CUGCGgCGUGU-AGC-UCUg -5'
17208 3' -53.8 NC_004333.2 + 21008 0.69 0.634101
Target:  5'- cCCGuGGCGUaGcCGCCGgGCGUCGGGuuGCa -3'
miRNA:   3'- -GGC-UUGCA-CuGCGGCgUGUAGCUC--UG- -5'
17208 3' -53.8 NC_004333.2 + 4059 0.69 0.634101
Target:  5'- aCGcAGCagcuaaACGCCGCcaACAUCGAGACg -3'
miRNA:   3'- gGC-UUGcac---UGCGGCG--UGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 40746 0.69 0.634101
Target:  5'- cCUGAACGcGAUGCUgaucgaGCGCAUCGcgcAGACc -3'
miRNA:   3'- -GGCUUGCaCUGCGG------CGUGUAGC---UCUG- -5'
17208 3' -53.8 NC_004333.2 + 47475 0.69 0.634101
Target:  5'- gCCG-GCGgcGACuGCCGCGCugaaCGAGGCg -3'
miRNA:   3'- -GGCuUGCa-CUG-CGGCGUGua--GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 39076 0.68 0.645173
Target:  5'- gCGAcuCGUG-CGCCGUGCGUCGGcACu -3'
miRNA:   3'- gGCUu-GCACuGCGGCGUGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 9427 0.68 0.656232
Target:  5'- -aGAAgGcccGACGCCGCGCGcCGAcGACg -3'
miRNA:   3'- ggCUUgCa--CUGCGGCGUGUaGCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 26055 0.68 0.656232
Target:  5'- gCCGGAUuugccaGUGGCGCCGCAg--CGGcGGCg -3'
miRNA:   3'- -GGCUUG------CACUGCGGCGUguaGCU-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.