Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17208 | 5' | -56 | NC_004333.2 | + | 48002 | 0.66 | 0.656232 |
Target: 5'- ---cAUCGGCGCGuucuGGCuugcccgcGCGCUCu- -3' miRNA: 3'- cucaUAGCCGCGCu---CCGu-------UGCGAGcu -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 47670 | 0.67 | 0.589895 |
Target: 5'- cGAGUucAUCGGUGCGcucGGCAAgGCgaaguaCGAc -3' miRNA: 3'- -CUCA--UAGCCGCGCu--CCGUUgCGa-----GCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 47020 | 0.66 | 0.656232 |
Target: 5'- ---cGUCGGCGCGcgccgccuuGGCuGCGCgCGAg -3' miRNA: 3'- cucaUAGCCGCGCu--------CCGuUGCGaGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 44990 | 0.69 | 0.442789 |
Target: 5'- ----uUCGGCGCGc-GCGACGCaUCGAg -3' miRNA: 3'- cucauAGCCGCGCucCGUUGCG-AGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 43988 | 0.69 | 0.452659 |
Target: 5'- uGGGUAUCGGUGCGcuacGUGGCGUUUGGu -3' miRNA: 3'- -CUCAUAGCCGCGCuc--CGUUGCGAGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 43102 | 1.09 | 0.000754 |
Target: 5'- cGAGUAUCGGCGCGAGGCAACGCUCGAc -3' miRNA: 3'- -CUCAUAGCCGCGCUCCGUUGCGAGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 42742 | 0.66 | 0.611963 |
Target: 5'- gGAGacgAUCGGCGCuGuuGCGGgcUGCUCGAc -3' miRNA: 3'- -CUCa--UAGCCGCG-CucCGUU--GCGAGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 41735 | 0.72 | 0.310865 |
Target: 5'- cGAGgagAUCGGCGCG-GGCGacucgcGCGC-CGGg -3' miRNA: 3'- -CUCa--UAGCCGCGCuCCGU------UGCGaGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 39222 | 0.68 | 0.514215 |
Target: 5'- ---cGUCGGC-CGAGcugcguGCAAUGCUCGAc -3' miRNA: 3'- cucaUAGCCGcGCUC------CGUUGCGAGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 38950 | 0.67 | 0.567971 |
Target: 5'- -----gCGGCGCGggugcgcggacGGGCGGCGUUCGu -3' miRNA: 3'- cucauaGCCGCGC-----------UCCGUUGCGAGCu -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 37697 | 0.69 | 0.452659 |
Target: 5'- -----cCGGCGCGuGGCGGCucaauggccuGCUCGAu -3' miRNA: 3'- cucauaGCCGCGCuCCGUUG----------CGAGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 37694 | 0.66 | 0.641852 |
Target: 5'- cGGGaUGUCGcGCGUGAcaucaugcagcaccGGCGACGaUUCGAa -3' miRNA: 3'- -CUC-AUAGC-CGCGCU--------------CCGUUGC-GAGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 37316 | 0.67 | 0.589895 |
Target: 5'- ---aGUCGGuCGCGGcGGUGcucgacGCGCUCGAa -3' miRNA: 3'- cucaUAGCC-GCGCU-CCGU------UGCGAGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 37101 | 0.66 | 0.611963 |
Target: 5'- cGAGgacGUCGGgcagcUGCGGGGCGugcucgaaGCGCUCa- -3' miRNA: 3'- -CUCa--UAGCC-----GCGCUCCGU--------UGCGAGcu -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 35086 | 0.69 | 0.442789 |
Target: 5'- uGGUGuUCGGCGCGAccGGCAAUGgUaCGGc -3' miRNA: 3'- cUCAU-AGCCGCGCU--CCGUUGCgA-GCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 31248 | 0.66 | 0.611963 |
Target: 5'- cGAGUA-CGGCGCGccgucuGGGCGGCGaugccaaggCGGg -3' miRNA: 3'- -CUCAUaGCCGCGC------UCCGUUGCga-------GCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 30500 | 0.72 | 0.28835 |
Target: 5'- -----gUGGCGCGAGGCAGuCGCUaCGGc -3' miRNA: 3'- cucauaGCCGCGCUCCGUU-GCGA-GCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 30374 | 0.73 | 0.281135 |
Target: 5'- uGGUGUCgcaGGCGCGAcGGCGGCcaGCUCGc -3' miRNA: 3'- cUCAUAG---CCGCGCU-CCGUUG--CGAGCu -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 30058 | 0.67 | 0.545178 |
Target: 5'- uGGUGcucgcgcUCGGCGcCGGuGGCAgcgcggccGCGCUCGGc -3' miRNA: 3'- cUCAU-------AGCCGC-GCU-CCGU--------UGCGAGCU- -5' |
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17208 | 5' | -56 | NC_004333.2 | + | 29121 | 0.67 | 0.589895 |
Target: 5'- ----cUCGGCGCGAucgugGGCGGCGCg--- -3' miRNA: 3'- cucauAGCCGCGCU-----CCGUUGCGagcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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