miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17211 3' -47.5 NC_004333.2 + 28543 0.66 0.982966
Target:  5'- cCGCGUUGcgacuguggcGCGCGuaACUGGCGGCcCGa -3'
miRNA:   3'- -GUGUAAC----------UGUGUugUGAUUGCCGaGC- -5'
17211 3' -47.5 NC_004333.2 + 19496 0.66 0.982966
Target:  5'- -----cGGCGCuggcGCGCUGGCGGCgcUCGu -3'
miRNA:   3'- guguaaCUGUGu---UGUGAUUGCCG--AGC- -5'
17211 3' -47.5 NC_004333.2 + 2992 0.66 0.981596
Target:  5'- gCACGUUGACggucacgaccgcugcGCAGCACgucuCGGC-Ca -3'
miRNA:   3'- -GUGUAACUG---------------UGUUGUGauu-GCCGaGc -5'
17211 3' -47.5 NC_004333.2 + 35385 0.66 0.980638
Target:  5'- ----aUGGCACGaguGCAgUAACGGCggCGg -3'
miRNA:   3'- guguaACUGUGU---UGUgAUUGCCGa-GC- -5'
17211 3' -47.5 NC_004333.2 + 39246 0.66 0.980638
Target:  5'- uGCAgcgcGCGCAGCACgGGCGGCa-- -3'
miRNA:   3'- gUGUaac-UGUGUUGUGaUUGCCGagc -5'
17211 3' -47.5 NC_004333.2 + 5264 0.66 0.978081
Target:  5'- aACG-UGAUGCGAUACgggGGCGuGCUCa -3'
miRNA:   3'- gUGUaACUGUGUUGUGa--UUGC-CGAGc -5'
17211 3' -47.5 NC_004333.2 + 12279 0.66 0.97223
Target:  5'- aACGU--ACACGGCACcGGCGGCgCGc -3'
miRNA:   3'- gUGUAacUGUGUUGUGaUUGCCGaGC- -5'
17211 3' -47.5 NC_004333.2 + 37693 0.66 0.97223
Target:  5'- -----cGGCcCGGCGCgUGGCGGCUCa -3'
miRNA:   3'- guguaaCUGuGUUGUG-AUUGCCGAGc -5'
17211 3' -47.5 NC_004333.2 + 27841 0.66 0.97223
Target:  5'- cUACAUgcUGACGaacguGCGcCUGACGGgCUCGg -3'
miRNA:   3'- -GUGUA--ACUGUgu---UGU-GAUUGCC-GAGC- -5'
17211 3' -47.5 NC_004333.2 + 5224 0.67 0.968916
Target:  5'- uGCGcUGcucgACAACACgGGCGGCUCGc -3'
miRNA:   3'- gUGUaACug--UGUUGUGaUUGCCGAGC- -5'
17211 3' -47.5 NC_004333.2 + 6792 0.67 0.968916
Target:  5'- --aAUUGAgCACGuuGCACgcAUGGCUCGu -3'
miRNA:   3'- gugUAACU-GUGU--UGUGauUGCCGAGC- -5'
17211 3' -47.5 NC_004333.2 + 47456 0.67 0.96533
Target:  5'- aCGCAUcGACuaGCAACGCgccGGCGGCg-- -3'
miRNA:   3'- -GUGUAaCUG--UGUUGUGa--UUGCCGagc -5'
17211 3' -47.5 NC_004333.2 + 3758 0.67 0.961463
Target:  5'- cCGCAgc--UACGACGC-GACGGCUCa -3'
miRNA:   3'- -GUGUaacuGUGUUGUGaUUGCCGAGc -5'
17211 3' -47.5 NC_004333.2 + 33172 0.68 0.952854
Target:  5'- uGCAagGGCGCGACG--AAgGGCUCGu -3'
miRNA:   3'- gUGUaaCUGUGUUGUgaUUgCCGAGC- -5'
17211 3' -47.5 NC_004333.2 + 20955 0.68 0.948099
Target:  5'- cCACGggccgGACGCaAACGCgcGCGGCgCGg -3'
miRNA:   3'- -GUGUaa---CUGUG-UUGUGauUGCCGaGC- -5'
17211 3' -47.5 NC_004333.2 + 11698 0.69 0.925977
Target:  5'- -cCGUcGACGCAGCGCcgGGCGGCg-- -3'
miRNA:   3'- guGUAaCUGUGUUGUGa-UUGCCGagc -5'
17211 3' -47.5 NC_004333.2 + 30162 0.69 0.91966
Target:  5'- gCGCAUcGACGCGuuccgucgGCGCU-ACGGCaUCGa -3'
miRNA:   3'- -GUGUAaCUGUGU--------UGUGAuUGCCG-AGC- -5'
17211 3' -47.5 NC_004333.2 + 39873 0.69 0.91966
Target:  5'- gCGCGUUcggacGGcCACAGCGCgAGCGGCgUCGg -3'
miRNA:   3'- -GUGUAA-----CU-GUGUUGUGaUUGCCG-AGC- -5'
17211 3' -47.5 NC_004333.2 + 44347 0.69 0.913028
Target:  5'- gCGCAUUGuGCGCAACA--AACGGCg-- -3'
miRNA:   3'- -GUGUAAC-UGUGUUGUgaUUGCCGagc -5'
17211 3' -47.5 NC_004333.2 + 7468 0.69 0.913028
Target:  5'- gGCAagGACACGGCGaccuGCGGCUUu -3'
miRNA:   3'- gUGUaaCUGUGUUGUgau-UGCCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.