miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 5' -64.1 NC_004333.2 + 45017 1.08 0.000153
Target:  5'- cCGGCCGCUCGACCGCGCGUGGCGCUGg -3'
miRNA:   3'- -GCCGGCGAGCUGGCGCGCACCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 28761 0.77 0.045145
Target:  5'- aGcGCCGCgUCGACCGCGCGggucgcggcGGCGCg- -3'
miRNA:   3'- gC-CGGCG-AGCUGGCGCGCa--------CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 40714 0.74 0.070196
Target:  5'- uCGGCCGCuUCGGCCuGauaccaGCGUGGCGUc- -3'
miRNA:   3'- -GCCGGCG-AGCUGG-Cg-----CGCACCGCGac -5'
17213 5' -64.1 NC_004333.2 + 44382 0.73 0.082688
Target:  5'- uGcGCUGCUCGGCgGCGCGUGcGCGgUa -3'
miRNA:   3'- gC-CGGCGAGCUGgCGCGCAC-CGCgAc -5'
17213 5' -64.1 NC_004333.2 + 31230 0.73 0.087305
Target:  5'- cCGGUCGCgaCGGCCGCGC--GGCGCa- -3'
miRNA:   3'- -GCCGGCGa-GCUGGCGCGcaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 24209 0.73 0.089705
Target:  5'- cCGGCCGCcUGGCCGC-CGUaaaacGGCGCUu -3'
miRNA:   3'- -GCCGGCGaGCUGGCGcGCA-----CCGCGAc -5'
17213 5' -64.1 NC_004333.2 + 9669 0.73 0.094693
Target:  5'- cCGGCCGau--GCCGCGCcggcUGGCGCUGa -3'
miRNA:   3'- -GCCGGCgagcUGGCGCGc---ACCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 29188 0.72 0.108336
Target:  5'- gGGCCGCUgcaCGAacCCGCGCaUGGCGUc- -3'
miRNA:   3'- gCCGGCGA---GCU--GGCGCGcACCGCGac -5'
17213 5' -64.1 NC_004333.2 + 28843 0.71 0.117386
Target:  5'- uCGcGCCGCcgCGAcCCGCGCGgucgacgcGGCGCUc -3'
miRNA:   3'- -GC-CGGCGa-GCU-GGCGCGCa-------CCGCGAc -5'
17213 5' -64.1 NC_004333.2 + 10744 0.71 0.117386
Target:  5'- uGGCgGCguaUCGuACCGCGCGgcccGGCGCa- -3'
miRNA:   3'- gCCGgCG---AGC-UGGCGCGCa---CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 45251 0.71 0.117386
Target:  5'- cCGGCa--UCGAagCGCGCGUGGCGCc- -3'
miRNA:   3'- -GCCGgcgAGCUg-GCGCGCACCGCGac -5'
17213 5' -64.1 NC_004333.2 + 45030 0.71 0.123806
Target:  5'- uCGGCCGCcgaCGugCGCGCGcaGGauaGCUGc -3'
miRNA:   3'- -GCCGGCGa--GCugGCGCGCa-CCg--CGAC- -5'
17213 5' -64.1 NC_004333.2 + 28883 0.71 0.123806
Target:  5'- uCGuGCCGCgCGAUCGCGCucGGCGCa- -3'
miRNA:   3'- -GC-CGGCGaGCUGGCGCGcaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 19629 0.71 0.127136
Target:  5'- uGuGCCGCgcCGACCGUGCGaccGGCGCc- -3'
miRNA:   3'- gC-CGGCGa-GCUGGCGCGCa--CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 19702 0.71 0.127136
Target:  5'- aCGGCCaGCgUCGGCCGCGCucgccGCGCUc -3'
miRNA:   3'- -GCCGG-CG-AGCUGGCGCGcac--CGCGAc -5'
17213 5' -64.1 NC_004333.2 + 12016 0.71 0.13055
Target:  5'- aGG-CGCUCGACCgccuggagcGCGCGUaauGGCGCg- -3'
miRNA:   3'- gCCgGCGAGCUGG---------CGCGCA---CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 5046 0.71 0.13055
Target:  5'- gCGGCCgGCUguUGGCCGacgucgGCGcGGCGCUGa -3'
miRNA:   3'- -GCCGG-CGA--GCUGGCg-----CGCaCCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 13933 0.7 0.137632
Target:  5'- uGGCCGCU--GCCGCcaGCGUGGcCGCc- -3'
miRNA:   3'- gCCGGCGAgcUGGCG--CGCACC-GCGac -5'
17213 5' -64.1 NC_004333.2 + 19768 0.7 0.140193
Target:  5'- uCGGCCGCuccaacgcacgggaUCGuGCCGCGCGUugagugcgauGCGCUGc -3'
miRNA:   3'- -GCCGGCG--------------AGC-UGGCGCGCAc---------CGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 33938 0.7 0.156904
Target:  5'- uGGCCGaCUCGGCUGCagcaGCGUGG-GUUa -3'
miRNA:   3'- gCCGGC-GAGCUGGCG----CGCACCgCGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.