miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 5' -64.1 NC_004333.2 + 2764 0.67 0.253842
Target:  5'- uCGGCCugUCGGCCGC-CGccGGCGCg- -3'
miRNA:   3'- -GCCGGcgAGCUGGCGcGCa-CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 5046 0.71 0.13055
Target:  5'- gCGGCCgGCUguUGGCCGacgucgGCGcGGCGCUGa -3'
miRNA:   3'- -GCCGG-CGA--GCUGGCg-----CGCaCCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 5101 0.66 0.286457
Target:  5'- cCGGCCGCcUGGCCGCcUGUcaaGCGCg- -3'
miRNA:   3'- -GCCGGCGaGCUGGCGcGCAc--CGCGac -5'
17213 5' -64.1 NC_004333.2 + 6663 0.66 0.262017
Target:  5'- uCGGCgCGCUCGagcaggcgcgcauccGCCGCuucacguGCGgGGCGCa- -3'
miRNA:   3'- -GCCG-GCGAGC---------------UGGCG-------CGCaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 6732 0.68 0.202882
Target:  5'- gCGcGCCuGCUCGAgCGCGCcgaGcGCGCUGc -3'
miRNA:   3'- -GC-CGG-CGAGCUgGCGCGca-C-CGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 6822 0.69 0.178584
Target:  5'- aGG-CGCgCGACCgggGCGcCGUGGCGCUc -3'
miRNA:   3'- gCCgGCGaGCUGG---CGC-GCACCGCGAc -5'
17213 5' -64.1 NC_004333.2 + 7505 0.67 0.25571
Target:  5'- gGGCCGuCUCGugcagcucugggcGCCGCGCGUcgaaggcaaggacacGGCGacCUGc -3'
miRNA:   3'- gCCGGC-GAGC-------------UGGCGCGCA---------------CCGC--GAC- -5'
17213 5' -64.1 NC_004333.2 + 9155 0.68 0.21338
Target:  5'- -uGCCuGCUCGACCGCaGC-UGcGCGCUu -3'
miRNA:   3'- gcCGG-CGAGCUGGCG-CGcAC-CGCGAc -5'
17213 5' -64.1 NC_004333.2 + 9539 0.66 0.260112
Target:  5'- uCGGCgGCggugCGGcacCCGCGCcUGGUGCg- -3'
miRNA:   3'- -GCCGgCGa---GCU---GGCGCGcACCGCGac -5'
17213 5' -64.1 NC_004333.2 + 9630 0.68 0.218802
Target:  5'- cCGGCUGC-CGGCgGCGCGccuGCGCc- -3'
miRNA:   3'- -GCCGGCGaGCUGgCGCGCac-CGCGac -5'
17213 5' -64.1 NC_004333.2 + 9669 0.73 0.094693
Target:  5'- cCGGCCGau--GCCGCGCcggcUGGCGCUGa -3'
miRNA:   3'- -GCCGGCgagcUGGCGCGc---ACCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 10268 0.66 0.27303
Target:  5'- aCGGCCGCa----UGCGCGUGcGCGaCUGc -3'
miRNA:   3'- -GCCGGCGagcugGCGCGCAC-CGC-GAC- -5'
17213 5' -64.1 NC_004333.2 + 10744 0.71 0.117386
Target:  5'- uGGCgGCguaUCGuACCGCGCGgcccGGCGCa- -3'
miRNA:   3'- gCCGgCG---AGC-UGGCGCGCa---CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 11055 0.66 0.293363
Target:  5'- gGGUCGaauuCUCGACCGC-CG-GGCGUg- -3'
miRNA:   3'- gCCGGC----GAGCUGGCGcGCaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 11902 0.67 0.224341
Target:  5'- cCGGCgcaaGCUgGAgCGCGcCGUcGCGCUGa -3'
miRNA:   3'- -GCCGg---CGAgCUgGCGC-GCAcCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 12016 0.71 0.13055
Target:  5'- aGG-CGCUCGACCgccuggagcGCGCGUaauGGCGCg- -3'
miRNA:   3'- gCCgGCGAGCUGG---------CGCGCA---CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 13904 0.69 0.165275
Target:  5'- gGGCUGCgcggCGGCUGC-CGUGGCGa-- -3'
miRNA:   3'- gCCGGCGa---GCUGGCGcGCACCGCgac -5'
17213 5' -64.1 NC_004333.2 + 13933 0.7 0.137632
Target:  5'- uGGCCGCU--GCCGCcaGCGUGGcCGCc- -3'
miRNA:   3'- gCCGGCGAgcUGGCG--CGCACC-GCGac -5'
17213 5' -64.1 NC_004333.2 + 15498 0.67 0.241676
Target:  5'- gGGCUGCUCGcggcggucaccgGCgGCGCGUcaaGCGCg- -3'
miRNA:   3'- gCCGGCGAGC------------UGgCGCGCAc--CGCGac -5'
17213 5' -64.1 NC_004333.2 + 18485 0.66 0.286457
Target:  5'- -cGCCGC-CGAUCGCGa--GGCGUUGc -3'
miRNA:   3'- gcCGGCGaGCUGGCGCgcaCCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.