miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 5' -64.1 NC_004333.2 + 45017 1.08 0.000153
Target:  5'- cCGGCCGCUCGACCGCGCGUGGCGCUGg -3'
miRNA:   3'- -GCCGGCGAGCUGGCGCGCACCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 29411 0.68 0.197803
Target:  5'- -cGCCGUUCG-CCGuCGC--GGCGCUGg -3'
miRNA:   3'- gcCGGCGAGCuGGC-GCGcaCCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 39224 0.68 0.205984
Target:  5'- uCGGCCgagcugcgugcaauGCUCGACCGCaccccgaGCGgccggcaGGCGCa- -3'
miRNA:   3'- -GCCGG--------------CGAGCUGGCG-------CGCa------CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 11055 0.66 0.293363
Target:  5'- gGGUCGaauuCUCGACCGC-CG-GGCGUg- -3'
miRNA:   3'- gCCGGC----GAGCUGGCGcGCaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 24209 0.73 0.089705
Target:  5'- cCGGCCGCcUGGCCGC-CGUaaaacGGCGCUu -3'
miRNA:   3'- -GCCGGCGaGCUGGCGcGCA-----CCGCGAc -5'
17213 5' -64.1 NC_004333.2 + 29188 0.72 0.108336
Target:  5'- gGGCCGCUgcaCGAacCCGCGCaUGGCGUc- -3'
miRNA:   3'- gCCGGCGA---GCU--GGCGCGcACCGCGac -5'
17213 5' -64.1 NC_004333.2 + 45251 0.71 0.117386
Target:  5'- cCGGCa--UCGAagCGCGCGUGGCGCc- -3'
miRNA:   3'- -GCCGgcgAGCUg-GCGCGCACCGCGac -5'
17213 5' -64.1 NC_004333.2 + 28883 0.71 0.123806
Target:  5'- uCGuGCCGCgCGAUCGCGCucGGCGCa- -3'
miRNA:   3'- -GC-CGGCGaGCUGGCGCGcaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 19768 0.7 0.140193
Target:  5'- uCGGCCGCuccaacgcacgggaUCGuGCCGCGCGUugagugcgauGCGCUGc -3'
miRNA:   3'- -GCCGGCG--------------AGC-UGGCGCGCAc---------CGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 20959 0.69 0.165275
Target:  5'- gGGCCGgaCGcaaaCGCGCGcGGCGCg- -3'
miRNA:   3'- gCCGGCgaGCug--GCGCGCaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 44412 0.69 0.15979
Target:  5'- aCGGCCugccgggcucgcugGCUgGugCGUGCGaGGCGCUc -3'
miRNA:   3'- -GCCGG--------------CGAgCugGCGCGCaCCGCGAc -5'
17213 5' -64.1 NC_004333.2 + 13933 0.7 0.137632
Target:  5'- uGGCCGCU--GCCGCcaGCGUGGcCGCc- -3'
miRNA:   3'- gCCGGCGAgcUGGCG--CGCACC-GCGac -5'
17213 5' -64.1 NC_004333.2 + 28761 0.77 0.045145
Target:  5'- aGcGCCGCgUCGACCGCGCGggucgcggcGGCGCg- -3'
miRNA:   3'- gC-CGGCG-AGCUGGCGCGCa--------CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 13904 0.69 0.165275
Target:  5'- gGGCUGCgcggCGGCUGC-CGUGGCGa-- -3'
miRNA:   3'- gCCGGCGa---GCUGGCGcGCACCGCgac -5'
17213 5' -64.1 NC_004333.2 + 44382 0.73 0.082688
Target:  5'- uGcGCUGCUCGGCgGCGCGUGcGCGgUa -3'
miRNA:   3'- gC-CGGCGAGCUGgCGCGCAC-CGCgAc -5'
17213 5' -64.1 NC_004333.2 + 5046 0.71 0.13055
Target:  5'- gCGGCCgGCUguUGGCCGacgucgGCGcGGCGCUGa -3'
miRNA:   3'- -GCCGG-CGA--GCUGGCg-----CGCaCCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 31611 0.69 0.165275
Target:  5'- aGcGCCGuCUCGGCCGC-UGUGGcCGCg- -3'
miRNA:   3'- gC-CGGC-GAGCUGGCGcGCACC-GCGac -5'
17213 5' -64.1 NC_004333.2 + 20515 0.68 0.202882
Target:  5'- cCGGCCGC-CG-CCGCGCcgcuCGCUGg -3'
miRNA:   3'- -GCCGGCGaGCuGGCGCGcaccGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 31230 0.73 0.087305
Target:  5'- cCGGUCGCgaCGGCCGCGC--GGCGCa- -3'
miRNA:   3'- -GCCGGCGa-GCUGGCGCGcaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 10744 0.71 0.117386
Target:  5'- uGGCgGCguaUCGuACCGCGCGgcccGGCGCa- -3'
miRNA:   3'- gCCGgCG---AGC-UGGCGCGCa---CCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.