miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 3' -55.5 NC_004333.2 + 45696 1.07 0.000889
Target:  5'- gAUCAGCUACCACAACGCACGCCUGCAu -3'
miRNA:   3'- -UAGUCGAUGGUGUUGCGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 9630 0.77 0.1384
Target:  5'- -cCGGCUGCCG--GCgGCGCGCCUGCGc -3'
miRNA:   3'- uaGUCGAUGGUguUG-CGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 12723 0.75 0.168784
Target:  5'- cAUCAGCUGCUGCAACGCguuACGCUgGUAc -3'
miRNA:   3'- -UAGUCGAUGGUGUUGCG---UGCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 6836 0.74 0.205005
Target:  5'- gAUCGGCUACCucgaGGCGCGCGaCCgggGCGc -3'
miRNA:   3'- -UAGUCGAUGGug--UUGCGUGC-GGa--CGU- -5'
17215 3' -55.5 NC_004333.2 + 40032 0.74 0.210699
Target:  5'- -gCGGC-GCCACGGCGCggACGCCUcGCAa -3'
miRNA:   3'- uaGUCGaUGGUGUUGCG--UGCGGA-CGU- -5'
17215 3' -55.5 NC_004333.2 + 31027 0.74 0.215938
Target:  5'- -gCAGCUGCUGCAGCaugugcgGCACGuCCUGCu -3'
miRNA:   3'- uaGUCGAUGGUGUUG-------CGUGC-GGACGu -5'
17215 3' -55.5 NC_004333.2 + 9157 0.73 0.234846
Target:  5'- -cCuGCUcgACCGCAGCuGCGCGCUUGCGu -3'
miRNA:   3'- uaGuCGA--UGGUGUUG-CGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 20762 0.73 0.241236
Target:  5'- -gCGGCUgcgcGCCugAACGUcgacACGCCUGCGc -3'
miRNA:   3'- uaGUCGA----UGGugUUGCG----UGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 11802 0.73 0.24777
Target:  5'- gGUCGGCUGCCggACAucGCGCaggACGCCaGCAc -3'
miRNA:   3'- -UAGUCGAUGG--UGU--UGCG---UGCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 6848 0.72 0.261276
Target:  5'- cGUCGGCUACCgGCGGC-UGCGCaCUGCAu -3'
miRNA:   3'- -UAGUCGAUGG-UGUUGcGUGCG-GACGU- -5'
17215 3' -55.5 NC_004333.2 + 39372 0.72 0.280452
Target:  5'- aAUCGGCUGCCagccccgggugaGCAgccaaccugcgaucGCGCGCGCgUGCGc -3'
miRNA:   3'- -UAGUCGAUGG------------UGU--------------UGCGUGCGgACGU- -5'
17215 3' -55.5 NC_004333.2 + 13286 0.72 0.290077
Target:  5'- gAUCGGCaccgaaguCCAC-GCGaCGCGCCUGCAc -3'
miRNA:   3'- -UAGUCGau------GGUGuUGC-GUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 35219 0.71 0.305387
Target:  5'- -cCGGaaaUGCCGCAACuGacaGCGCCUGCAg -3'
miRNA:   3'- uaGUCg--AUGGUGUUG-Cg--UGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 21860 0.71 0.305387
Target:  5'- uUCAGCUGCCACucGCGCGgcacuuCGCCgaaugGCu -3'
miRNA:   3'- uAGUCGAUGGUGu-UGCGU------GCGGa----CGu -5'
17215 3' -55.5 NC_004333.2 + 4841 0.71 0.305387
Target:  5'- aGUCGGCUgACCGuacGCGCGCGCCgUGCc -3'
miRNA:   3'- -UAGUCGA-UGGUgu-UGCGUGCGG-ACGu -5'
17215 3' -55.5 NC_004333.2 + 9054 0.71 0.337844
Target:  5'- cGUCGGUcGCCGCcGCGCACgGCC-GCAc -3'
miRNA:   3'- -UAGUCGaUGGUGuUGCGUG-CGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 40877 0.7 0.358491
Target:  5'- gAUCAGCUccaucgacggggcgaGCgACAugACGCGUGCCUGCGg -3'
miRNA:   3'- -UAGUCGA---------------UGgUGU--UGCGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 25570 0.7 0.363789
Target:  5'- gAUCAGCUGCgcaaACAGCGCcUGCCacGCAg -3'
miRNA:   3'- -UAGUCGAUGg---UGUUGCGuGCGGa-CGU- -5'
17215 3' -55.5 NC_004333.2 + 23050 0.7 0.372738
Target:  5'- cUCGGCgaccggUACCGCGACGC-UGCCgGCGg -3'
miRNA:   3'- uAGUCG------AUGGUGUUGCGuGCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 47811 0.7 0.378179
Target:  5'- aGUCGGCcgggguguacgagGCCACGGCGCGCGaCgUGCc -3'
miRNA:   3'- -UAGUCGa------------UGGUGUUGCGUGC-GgACGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.