miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 3' -55.5 NC_004333.2 + 1926 0.66 0.612537
Target:  5'- cGUCAGa-ACCGC-ACGaCACcgGCCUGCAc -3'
miRNA:   3'- -UAGUCgaUGGUGuUGC-GUG--CGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 2655 0.69 0.429485
Target:  5'- -cCGGCguaucaGCCGCAACGCcgGCaGCUUGCAg -3'
miRNA:   3'- uaGUCGa-----UGGUGUUGCG--UG-CGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 2758 0.7 0.391081
Target:  5'- uGUCGGCcGCCGcCGGCGCgACG-CUGCAa -3'
miRNA:   3'- -UAGUCGaUGGU-GUUGCG-UGCgGACGU- -5'
17215 3' -55.5 NC_004333.2 + 3991 0.68 0.501661
Target:  5'- gGUCGGcCUGCCGCcGCuGC-CGCCUgGCGc -3'
miRNA:   3'- -UAGUC-GAUGGUGuUG-CGuGCGGA-CGU- -5'
17215 3' -55.5 NC_004333.2 + 4841 0.71 0.305387
Target:  5'- aGUCGGCUgACCGuacGCGCGCGCCgUGCc -3'
miRNA:   3'- -UAGUCGA-UGGUgu-UGCGUGCGG-ACGu -5'
17215 3' -55.5 NC_004333.2 + 4876 0.67 0.567459
Target:  5'- ---cGCUGCCGCcgcugaccauguAGCGCGCG-CUGCGa -3'
miRNA:   3'- uaguCGAUGGUG------------UUGCGUGCgGACGU- -5'
17215 3' -55.5 NC_004333.2 + 4968 0.66 0.612537
Target:  5'- -aCGGCgcacUAUCGCAGCGCGCGCUa--- -3'
miRNA:   3'- uaGUCG----AUGGUGUUGCGUGCGGacgu -5'
17215 3' -55.5 NC_004333.2 + 5280 0.66 0.588795
Target:  5'- --gAGUUugCGacggugcCGACGcCGCGCCUGCAg -3'
miRNA:   3'- uagUCGAugGU-------GUUGC-GUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 5678 0.69 0.4495
Target:  5'- --aAGCUGCCGCAcggccugaacguGCGCAUGCCcgaugGCc -3'
miRNA:   3'- uagUCGAUGGUGU------------UGCGUGCGGa----CGu -5'
17215 3' -55.5 NC_004333.2 + 6592 0.67 0.556306
Target:  5'- cAUC-GCcGCCACGGCGCGcCGCCcaGCGc -3'
miRNA:   3'- -UAGuCGaUGGUGUUGCGU-GCGGa-CGU- -5'
17215 3' -55.5 NC_004333.2 + 6836 0.74 0.205005
Target:  5'- gAUCGGCUACCucgaGGCGCGCGaCCgggGCGc -3'
miRNA:   3'- -UAGUCGAUGGug--UUGCGUGC-GGa--CGU- -5'
17215 3' -55.5 NC_004333.2 + 6848 0.72 0.261276
Target:  5'- cGUCGGCUACCgGCGGC-UGCGCaCUGCAu -3'
miRNA:   3'- -UAGUCGAUGG-UGUUGcGUGCG-GACGU- -5'
17215 3' -55.5 NC_004333.2 + 7825 0.68 0.480456
Target:  5'- uUUAGCUcgcucGCCAgauCGACGCG-GCCUGCGc -3'
miRNA:   3'- uAGUCGA-----UGGU---GUUGCGUgCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 9054 0.71 0.337844
Target:  5'- cGUCGGUcGCCGCcGCGCACgGCC-GCAc -3'
miRNA:   3'- -UAGUCGaUGGUGuUGCGUG-CGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 9157 0.73 0.234846
Target:  5'- -cCuGCUcgACCGCAGCuGCGCGCUUGCGu -3'
miRNA:   3'- uaGuCGA--UGGUGUUG-CGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 9630 0.77 0.1384
Target:  5'- -cCGGCUGCCG--GCgGCGCGCCUGCGc -3'
miRNA:   3'- uaGUCGAUGGUguUG-CGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 10283 0.67 0.545218
Target:  5'- -gCAGCUuugaugccgacgGCCGCAugcGCGUGCGCgaCUGCAu -3'
miRNA:   3'- uaGUCGA------------UGGUGU---UGCGUGCG--GACGU- -5'
17215 3' -55.5 NC_004333.2 + 11802 0.73 0.24777
Target:  5'- gGUCGGCUGCCggACAucGCGCaggACGCCaGCAc -3'
miRNA:   3'- -UAGUCGAUGG--UGU--UGCG---UGCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 11822 0.69 0.410003
Target:  5'- cAUCAGC-GCgACGGCGCGCuccaGCUUGCGc -3'
miRNA:   3'- -UAGUCGaUGgUGUUGCGUG----CGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 12375 0.69 0.4495
Target:  5'- --aGGCUggcgcgcaggacGCCGCAAUGCGCGCCgccgGUg -3'
miRNA:   3'- uagUCGA------------UGGUGUUGCGUGCGGa---CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.