miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 3' -55.5 NC_004333.2 + 45696 1.07 0.000889
Target:  5'- gAUCAGCUACCACAACGCACGCCUGCAu -3'
miRNA:   3'- -UAGUCGAUGGUGUUGCGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 18854 0.68 0.470019
Target:  5'- -gCAGUUGCCgugcGCAACGCAuugcCGCCgggGCGc -3'
miRNA:   3'- uaGUCGAUGG----UGUUGCGU----GCGGa--CGU- -5'
17215 3' -55.5 NC_004333.2 + 41943 0.68 0.480456
Target:  5'- -gCGGCUACCugAACG-ACGCUgaGCAc -3'
miRNA:   3'- uaGUCGAUGGugUUGCgUGCGGa-CGU- -5'
17215 3' -55.5 NC_004333.2 + 37907 0.66 0.623876
Target:  5'- uUCGcGCUcuCgGCGACGCAaacUGCCUGCGu -3'
miRNA:   3'- uAGU-CGAu-GgUGUUGCGU---GCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 31027 0.74 0.215938
Target:  5'- -gCAGCUGCUGCAGCaugugcgGCACGuCCUGCu -3'
miRNA:   3'- uaGUCGAUGGUGUUG-------CGUGC-GGACGu -5'
17215 3' -55.5 NC_004333.2 + 9157 0.73 0.234846
Target:  5'- -cCuGCUcgACCGCAGCuGCGCGCUUGCGu -3'
miRNA:   3'- uaGuCGA--UGGUGUUG-CGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 6848 0.72 0.261276
Target:  5'- cGUCGGCUACCgGCGGC-UGCGCaCUGCAu -3'
miRNA:   3'- -UAGUCGAUGG-UGUUGcGUGCG-GACGU- -5'
17215 3' -55.5 NC_004333.2 + 4841 0.71 0.305387
Target:  5'- aGUCGGCUgACCGuacGCGCGCGCCgUGCc -3'
miRNA:   3'- -UAGUCGA-UGGUgu-UGCGUGCGG-ACGu -5'
17215 3' -55.5 NC_004333.2 + 47805 0.69 0.400471
Target:  5'- --aGGCUGaucgUGCAGCGCGcCGCCUGCGg -3'
miRNA:   3'- uagUCGAUg---GUGUUGCGU-GCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 14791 0.68 0.463813
Target:  5'- uUCGGUUggccuuccaucuuucGCCGC-ACGCGCGCgaGCAg -3'
miRNA:   3'- uAGUCGA---------------UGGUGuUGCGUGCGgaCGU- -5'
17215 3' -55.5 NC_004333.2 + 25374 0.69 0.410003
Target:  5'- cGUCGGUcugauucgACCACAucgagccauccgGCgaGCGCGCCUGCAg -3'
miRNA:   3'- -UAGUCGa-------UGGUGU------------UG--CGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 25570 0.7 0.363789
Target:  5'- gAUCAGCUGCgcaaACAGCGCcUGCCacGCAg -3'
miRNA:   3'- -UAGUCGAUGg---UGUUGCGuGCGGa-CGU- -5'
17215 3' -55.5 NC_004333.2 + 9630 0.77 0.1384
Target:  5'- -cCGGCUGCCG--GCgGCGCGCCUGCGc -3'
miRNA:   3'- uaGUCGAUGGUguUG-CGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 2655 0.69 0.429485
Target:  5'- -cCGGCguaucaGCCGCAACGCcgGCaGCUUGCAg -3'
miRNA:   3'- uaGUCGa-----UGGUGUUGCG--UG-CGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 12723 0.75 0.168784
Target:  5'- cAUCAGCUGCUGCAACGCguuACGCUgGUAc -3'
miRNA:   3'- -UAGUCGAUGGUGUUGCG---UGCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 35219 0.71 0.305387
Target:  5'- -cCGGaaaUGCCGCAACuGacaGCGCCUGCAg -3'
miRNA:   3'- uaGUCg--AUGGUGUUG-Cg--UGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 36143 0.68 0.456626
Target:  5'- -cCGGCgcaACCuuCAACGCcucguugacguagaGCGCCUGCAc -3'
miRNA:   3'- uaGUCGa--UGGu-GUUGCG--------------UGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 7825 0.68 0.480456
Target:  5'- uUUAGCUcgcucGCCAgauCGACGCG-GCCUGCGc -3'
miRNA:   3'- uAGUCGA-----UGGU---GUUGCGUgCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 40032 0.74 0.210699
Target:  5'- -gCGGC-GCCACGGCGCggACGCCUcGCAa -3'
miRNA:   3'- uaGUCGaUGGUGUUGCG--UGCGGA-CGU- -5'
17215 3' -55.5 NC_004333.2 + 20762 0.73 0.241236
Target:  5'- -gCGGCUgcgcGCCugAACGUcgacACGCCUGCGc -3'
miRNA:   3'- uaGUCGA----UGGugUUGCG----UGCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.